Gene
RNA
| Item | Value |
|---|---|
| gene id | G191489 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000043 |
| NCBI id | null |
| chromosome length | 7746009 |
| location | 3167897 ~ 3168172 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU217466 | True | 276 | lncRNA | 0.59 | 1 | 3167897 | 3168172 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000043_03138222_03139281 | NA | coding | downstream | 28264 | 3137166 ~ 3139633 (-) |
| CI01000043_03133480_03136057 | NA | coding | downstream | 31572 | 3133429 ~ 3136325 (-) |
| CI01000043_02912881_02924260 | NA | coding | downstream | 243482 | 2912876 ~ 2924415 (-) |
| CI01000043_02868129_02876445 | NA | coding | downstream | 291432 | 2867416 ~ 2876465 (-) |
| CI01000043_02725571_02730393 | NA | coding | downstream | 437037 | 2725152 ~ 2730860 (-) |
| CI01000043_03325623_03351622 | DHX38 | coding | upstream | 157216 | 3325388 ~ 3353062 (-) |
| CI01000043_03356337_03361772 | CYB5B | coding | upstream | 187879 | 3356051 ~ 3363143 (-) |
| CI01000043_03377513_03382227 | NA | coding | upstream | 208733 | 3376905 ~ 3382425 (-) |
| CI01000043_03452739_03529381 | CPNE7 | coding | upstream | 283419 | 3451591 ~ 3529693 (-) |
| CI01000043_03539141_03543311 | CASC3.L, RPL13.S, RPL13 | coding | upstream | 370933 | 3539105 ~ 3543892 (-) |
| G191483 | NA | non-coding | downstream | 16826 | 3150831 ~ 3151071 (-) |
| G191299 | NA | non-coding | downstream | 283350 | 2880396 ~ 2884547 (-) |
| G190873 | NA | non-coding | downstream | 573305 | 2594314 ~ 2594592 (-) |
| G190869 | NA | non-coding | downstream | 619597 | 2548070 ~ 2548300 (-) |
| G190861 | NA | non-coding | downstream | 640204 | 2527180 ~ 2527693 (-) |
| G191491 | NA | non-coding | upstream | 2198 | 3170370 ~ 3170592 (-) |
| G191506 | NA | non-coding | upstream | 42565 | 3210737 ~ 3213930 (-) |
| G191510 | NA | non-coding | upstream | 47977 | 3216149 ~ 3216495 (-) |
| G191511 | NA | non-coding | upstream | 48497 | 3216669 ~ 3216870 (-) |
| G191517 | NA | non-coding | upstream | 63921 | 3232093 ~ 3232326 (-) |
| G191296 | NA | other | downstream | 118033 | 3048372 ~ 3049864 (-) |
| CI01000043_02245322_02249390 | GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP | other | downstream | 918417 | 2244688 ~ 2249480 (-) |
| G189881 | NA | other | downstream | 2284729 | 814747 ~ 883168 (-) |
| G192109 | NA | other | upstream | 1163739 | 4331911 ~ 4332726 (-) |
| G192980 | NA | other | upstream | 2288325 | 5456497 ~ 5458414 (-) |
| G192947 | NA | other | upstream | 2425509 | 5593681 ~ 5618440 (-) |
| G193313 | NA | other | upstream | 3087400 | 6255572 ~ 6256279 (-) |
| G193922 | NA | other | upstream | 3395168 | 6563340 ~ 6566039 (-) |
