Gene
RNA
| Item | Value |
|---|---|
| gene id | G191510 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000043 |
| NCBI id | null |
| chromosome length | 7746009 |
| location | 3216149 ~ 3216495 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: E3 ubiquitin-protein ligase TRAIP |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU217487 | True | 347 | lncRNA | 0.37 | 1 | 3216149 | 3216495 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000043_03138222_03139281 | NA | coding | downstream | 76516 | 3137166 ~ 3139633 (-) |
| CI01000043_03133480_03136057 | NA | coding | downstream | 79824 | 3133429 ~ 3136325 (-) |
| CI01000043_02912881_02924260 | NA | coding | downstream | 291734 | 2912876 ~ 2924415 (-) |
| CI01000043_02868129_02876445 | NA | coding | downstream | 339684 | 2867416 ~ 2876465 (-) |
| CI01000043_02725571_02730393 | NA | coding | downstream | 485289 | 2725152 ~ 2730860 (-) |
| CI01000043_03325623_03351622 | DHX38 | coding | upstream | 108893 | 3325388 ~ 3353062 (-) |
| CI01000043_03356337_03361772 | CYB5B | coding | upstream | 139556 | 3356051 ~ 3363143 (-) |
| CI01000043_03377513_03382227 | NA | coding | upstream | 160410 | 3376905 ~ 3382425 (-) |
| CI01000043_03452739_03529381 | CPNE7 | coding | upstream | 235096 | 3451591 ~ 3529693 (-) |
| CI01000043_03539141_03543311 | CASC3.L, RPL13.S, RPL13 | coding | upstream | 322610 | 3539105 ~ 3543892 (-) |
| G191506 | NA | non-coding | downstream | 2219 | 3210737 ~ 3213930 (-) |
| G191491 | NA | non-coding | downstream | 45557 | 3170370 ~ 3170592 (-) |
| G191489 | NA | non-coding | downstream | 47977 | 3167897 ~ 3168172 (-) |
| G191483 | NA | non-coding | downstream | 65078 | 3150831 ~ 3151071 (-) |
| G191299 | NA | non-coding | downstream | 331602 | 2880396 ~ 2884547 (-) |
| G191511 | NA | non-coding | upstream | 174 | 3216669 ~ 3216870 (-) |
| G191517 | NA | non-coding | upstream | 15598 | 3232093 ~ 3232326 (-) |
| G191534 | NA | non-coding | upstream | 36580 | 3253075 ~ 3253275 (-) |
| G191535 | NA | non-coding | upstream | 37472 | 3253967 ~ 3254272 (-) |
| G191536 | NA | non-coding | upstream | 39707 | 3256202 ~ 3256427 (-) |
| G191296 | NA | other | downstream | 166285 | 3048372 ~ 3049864 (-) |
| CI01000043_02245322_02249390 | GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP | other | downstream | 966669 | 2244688 ~ 2249480 (-) |
| G189881 | NA | other | downstream | 2332981 | 814747 ~ 883168 (-) |
| G192109 | NA | other | upstream | 1115416 | 4331911 ~ 4332726 (-) |
| G192980 | NA | other | upstream | 2240002 | 5456497 ~ 5458414 (-) |
| G192947 | NA | other | upstream | 2377186 | 5593681 ~ 5618440 (-) |
| G193313 | NA | other | upstream | 3039077 | 6255572 ~ 6256279 (-) |
| G193922 | NA | other | upstream | 3346845 | 6563340 ~ 6566039 (-) |
