XLOC_009332 (lgals9l6)


Basic Information

Item Value
gene id XLOC_009332
gene name lgals9l6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 30987414 ~ 31000306 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018348
AGCATCCCGTTCTCTGGTCCACTACTGGGAGGCCTGCAGGAAGGGAAGACTCTTATCATAATTGGACATGTTTTACCAACTGCTAATGAATTTGGTGTGAATCTCCAGCATGCCACTGAGTGCGGGACTGATATCGCTCTGCACTTTAAACCATGTTTTAATGATGGACCTGCATATATTGTGTTCAACACTTTTGAGAAAGGTAGCTGGGGGCTAGAAGAAAAGTCTGCCTGTCCCCTCATCAAAGGCCAAACGTTTACTCTTGAGTTCCATGTTACCAAGGAGGCATACAAGGTAAGTGTGAACGGGAAACATTTAGCGGACTATAAACACCGTATTCCCTTCACTCTGGTGGACACCATCTCAGTGCACAAAACAGTGGAGCTGGATTTCATTGCTTACCAGAAGCCTGCGACCGTTCCATACACAACCCTGATCAGTGATGGACTGAAGTCTGGCAAAGACATTGTTATTCATGGAGTTCCTAATGCTGACTCAAAAAGGATGGAGTTTAATCTGCGCCACAGATTTGGGATTGCATTTCACTACCAATGCCGTTTTGATCAGAATGCTGTAGTCTGCAACACCTGGGAGAATGGGAAATGGGGGGCAGAAGAAAAACATGGACCTGTGCCTTTTATCCGAGGCCAGTTTTTTCAGGTCAAAATCTCCTGTCACAGTGATCATTATGATGTGTTTGTGAATGGCAagcaaacacacatttacaagCACCGCTTCACTGAACTGGAGGACATCGACGTCTTTGAAGTCCGTGGAAATGTGGAGGTGatttttgtgcatgtgaaatAAGGATCCAGGATTGCAGGAAGTGCATGTTTAAAACTTCCACAAACAAGTTTATGTCATATGATAATATTATATAGATTCTCCTTGTGAATCTAGAAAAATCAACATGTCAAACTGTTGATAATACAATATGTATTTGTAtctaatataaacaataaaaatgatttcatTTGA
>TCONS_00018349
ATCCAACTGAAGATTTGCTAAAGACTCTGAAAAGCAAGAGTTGTCAGAATGGCAGACTGTCAGCAATATCCTTTTCTCAGCCCAAGCATCCCATTCATTGGTCCACTACTAGGAGGCCTGCAGGAAGGGAAGACTCTTATCATAATTGGACGGGTTTTGCCTAATGCTGACAAATTTACTGTGGACCTCCAGCATGCTACTGGGTGCGGGACTGATATCGCTCTGCACTTTAAACCACATTTTGATGATGGACCTACACATATTGTGTTCAACACCTTTGAGAAAGGTAACTGGGGGCCAGAAGAAAAGTCTACCTGTCCTTTTGTGAAAGGCCAACCGTTCACCCTTGAGATCCATGTTACCAAGGAGGCATACAAGGTAAGTGTGAATGGGCAACACTTAGCAGACTATAAACACCGTATTTCATTCACTCTGGTGGACACCATCTTAGTGCACCAAATGGTGGAGCTGGATTTCATTGCTTACCAGAAACCTGTGACCGTCCCATATAAAACCCTGATCAGTGATGGAATGAAGTCTGGCAAAGACATTGTTATTCATGGAGTTCCTAATGCTGACTCAAAAAGGATGGAGTTTAATCTGCGCCACAGATTTGGGATTGCATTTCACTACCAATGCCGTTTTGATCAGAATGCTGTAGTCTGCAACACCTGGGAGAATGGGAAATGGGGGGCAGAAGAAAAACATGGACCTGTGCCTTTTATCCGAGGCCAGTTTTTTCAGGTCAAAATCTCCTGTCACAGTGATCATTATGATGTGTTTGTGAATGGCAagcaaacacacatttacaagCACCGCTTCACTGAACTGGAGGACATCGACGTCTTTGAAGTCCGTGGAAATGTGGAGGTGatttttgtgcatgtgaaatAAGGATCCAGGATTGCAGGAAGTGCATGTTTAAAACTTCCACAAACAAGTTTATGTCATATGATAATATTATATAGATTCTCCTTGTGAATCTAGAAAAATCAACATGTCAAACTGTTGATAATACAATATGTATTTGTAtctaatataaacaataaaaatgatttcatTTG
>TCONS_00018350
ATATTGCTTCATCAGCCGTAAGGTCTTGAACATCCAACTGAAGATTTGCTAAAGACTCTGAAAAGCAAGAGTTGTCAGAATGGCAGACTGTCAGCAATATCCTTTTCTCAGCCCAAGCATCCCATTCATTGGTCCACTACTAGGAGGCCTGCAGGAAGGGAAGACTCTTATCATAATTGGACGGGTTTTGCCTAATGCTGACAAATTTACTGTGGACCTCCAGCATGCTACTGGGTGCGGGACTGATATCGCTCTGCACTTTAAACCACATTTTGATGATGGACCTACACATATTGTGTTCAACACCTTTGAGAAAGGTAACTGGGGGCCAGAAGAAAAGTCTACCTGTCCTTTTGTGAAAGGCCAACCGTTCACCCTTGAGATCCATGTTACCAAGGAGGCATACAAGGTAAGTGTGAATGGGCAACACTTAGCAGACTATAAACACCGTATTTCATTCACTCTGGTGGACACCATCTTAGTGCACCAAATGGTGGAGCTGGATTTCATTGCTTACCAGAAACCTGTGACCGTCCCATATAAAACCCTGATCAGTGATGGAATGAAGTCTGGCAAAGACATTGTTATTCATGGAGTTCCTAATGCTGACTCAAAAAGGATAGAGTTTAATCTGCGCCACAGATTTGGGAGTGCATTTCACTACCAATGCCGTTTCGATGAGAACGCTGTTGTGCGAAATACCCATGAGAATGGGAGTTGGGGGCCAGAAGAAAGAGATGGAGCTGTGCCTTTTATCCCAGGCCAGTTCTTTCAGGTCAAAATCTCCTGCAACAGAGATCATTTTGATGTGTTTGTGAATGGCGagcaaatacacacatacaagCACCGCTTCACTAAACTGGAGGAAATCGACGTCTTTGAAGTTTATGGGCAGCTGGAGCTGTTTTATGTGCATGTGTAACTGATCCAGGTTGATATGAAGTGCACATTCAAAACGTCCACAAAGTTCATTTCATATGATTCAAGAAAAATCTGGTGGTCAATATCTGTTGATAATACAATATCTATTTCTTCATACATCTACTCTTTTACACTTCTCTGGATATATCTATCTGCATTTAAATCAAGGTAGAAGTAGAATGTTTGAAATTTGTGTGAAATAATGTGTACGctttcatttctaatttaaccTGAGTGTGTGATTGGTTCTATGTGACTTTTATTATCCATGTATATTTGTTTCTTTTGAATCGGGGAATTAAGGGAAAGGTGCAAAAGTGTCTTTAGAGCCTGATTCTGTAGCCATAATgtctgagctctgcatcaggacaatcacataaatcaaaaataatgatatttgaggatttttttttacctgaatcATATTATGTTGAGACTGAAAATCATATTGTTTATTGATCATATTCTAATATTCTCTGTATACTTATATGCaataaaattaaaccaaaaaaattA

Function

symbol description
lgals9l6 Predicted to enable carbohydrate binding activity and galactoside binding activity. Predicted to be involved in negative regulation of CD4-positive, alpha-beta T cell proliferation; negative regulation of interferon-gamma production; and positive regulation of gene expression. Predicted to be active in cytosol and nucleus.

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0010629 negative regulation of gene expression biological_process
GO:0032689 negative regulation of interferon-gamma production biological_process
GO:2000562 negative regulation of CD4-positive, alpha-beta T cell proliferation biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0030246 carbohydrate binding molecular_function
GO:0016936 galactoside binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070822-22 Predicted to enable carbohydrate binding activity and galactoside binding activity. Predicted to be involved in negative regulation of CD4-positive, alpha-beta T cell proliferation; negative regulation of interferon-gamma production; and positive regulation of gene expression. Predicted to be active in cytosol and nucleus.
ZDB-GENE-131119-90 Predicted to enable carbohydrate binding activity and galactoside binding activity. Predicted to be involved in negative regulation of CD4-positive, alpha-beta T cell proliferation; negative regulation of interferon-gamma production; and positive regulation of gene expression. Predicted to be active in cytosol and nucleus.

Ensembl:

ensembl_id ENSDARG00000087311 ENSDARG00000093059

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018348 False 981 mRNA 0.42 6 30987414 30989360
TCONS_00018349 False 1064 mRNA 0.42 7 30987415 31000275
TCONS_00018350 True 1437 mRNA 0.39 7 30994538 31000306

Neighbor

gene id symbol gene type direction distance location
XLOC_009329 nf1a coding downstream 2610 30861647 ~ 30984804 (-)
XLOC_009331 NA coding downstream 63325 30923150 ~ 30924089 (-)
XLOC_009330 NA coding downstream 72153 30911402 ~ 30915261 (-)
XLOC_009328 akap1b coding downstream 130064 30836981 ~ 30857350 (-)
XLOC_009327 msi2b coding downstream 154517 30424645 ~ 30832897 (-)
XLOC_009333 AL928870.1 coding upstream 5675 31005981 ~ 31012712 (-)
XLOC_009334 lgals9l4 coding upstream 21708 31022014 ~ 31027112 (-)
XLOC_009335 lgals9l1 coding upstream 31949 31032255 ~ 31043183 (-)
XLOC_009336 lgals9l3 coding upstream 53894 31054200 ~ 31067589 (-)
XLOC_009337 ksr1b coding upstream 70297 31070603 ~ 31147322 (-)
XLOC_009326 NA non-coding downstream 626000 30359330 ~ 30361414 (-)
XLOC_009325 NA non-coding downstream 665200 30316728 ~ 30322214 (-)
XLOC_009324 NA non-coding downstream 681614 30300780 ~ 30305800 (-)
XLOC_009342 AL928851.2 non-coding upstream 299257 31299563 ~ 31299678 (-)
XLOC_009344 AL928851.1 non-coding upstream 314903 31315209 ~ 31315548 (-)
XLOC_009348 AL845428.2 non-coding upstream 361481 31361787 ~ 31362141 (-)
XLOC_009360 AL929092.1 non-coding upstream 547428 31547734 ~ 31547852 (-)

Expression


Co-expression Network