Gene
RNA
| Item | Value |
|---|---|
| gene id | G191275 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000043 |
| NCBI id | null |
| chromosome length | 7746009 |
| location | 3649076 ~ 3649572 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU217229 | True | 497 | lncRNA | 0.48 | 1 | 3649076 | 3649572 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000043_03630982_03636231 | PSMD7, PSD7, PSMD7.L | coding | upstream | 12647 | 3629304 ~ 3636429 (+) |
| CI01000043_03600460_03603309 | NA | coding | upstream | 45672 | 3600275 ~ 3603404 (+) |
| CI01000043_03292361_03301513 | NA | coding | upstream | 347563 | 3292361 ~ 3301513 (+) |
| CI01000043_03270751_03284680 | NA | coding | upstream | 364314 | 3270751 ~ 3284762 (+) |
| CI01000043_03157095_03221503 | NA | coding | upstream | 426453 | 3156717 ~ 3222623 (+) |
| CI01000043_03678916_03691863 | ZNF143A | coding | downstream | 29244 | 3678816 ~ 3692052 (+) |
| CI01000043_03696702_03699679 | NA | coding | downstream | 46898 | 3696470 ~ 3699879 (+) |
| CI01000043_03718802_03730935 | TRIP4 | coding | downstream | 68388 | 3717960 ~ 3731638 (+) |
| CI01000043_03733099_03736327 | NA | coding | downstream | 82860 | 3732432 ~ 3736375 (+) |
| CI01000043_03806399_03849817 | ZNF609 | coding | downstream | 154970 | 3804542 ~ 3850527 (+) |
| G191273 | NA | non-coding | upstream | 2812 | 3645838 ~ 3646264 (+) |
| G191272 | NA | non-coding | upstream | 5064 | 3643737 ~ 3644012 (+) |
| G191265 | NA | non-coding | upstream | 76504 | 3572246 ~ 3572572 (+) |
| G191047 | NA | non-coding | upstream | 105702 | 3479286 ~ 3543374 (+) |
| G191228 | NA | non-coding | upstream | 197942 | 3449165 ~ 3451134 (+) |
| G191277 | NA | non-coding | downstream | 1668 | 3651240 ~ 3651469 (+) |
| G191278 | NA | non-coding | downstream | 2353 | 3651925 ~ 3652233 (+) |
| G191281 | NA | non-coding | downstream | 5889 | 3655461 ~ 3655685 (+) |
| G191669 | NA | non-coding | downstream | 261268 | 3910840 ~ 3911450 (+) |
| G191685 | NA | non-coding | downstream | 294169 | 3943741 ~ 3944009 (+) |
| G190272 | NA | other | upstream | 1205366 | 2441862 ~ 2443710 (+) |
| G190241 | NA | other | upstream | 1956597 | 1683556 ~ 1692479 (+) |
| G191670 | NA | other | downstream | 253661 | 3903233 ~ 3909966 (+) |
| G191644 | NA | other | downstream | 658376 | 4307948 ~ 4350614 (+) |
| G192454 | NA | other | downstream | 1343441 | 4993013 ~ 4993356 (+) |
| CI01000043_05114193_05114497 | BOLA3 | other | downstream | 1464314 | 5114193 ~ 5114497 (+) |
| CI01000043_05169578_05171795 | CLEC3A | other | downstream | 1520033 | 5169578 ~ 5171848 (+) |
