G191669


Basic Information

Item Value
gene id G191669
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3910840 ~ 3911450 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU217664
AACTGATGATATTCTAACATTTCATCGTGTTGAGCTATATAACATTGATTAGCCTGCTGCCTACATTTGCTTACCTTGTCTAATAACGTGCAAGAGCGGCGTCTCTGTCAAGTCAAAGTTGTCGCAAAGCTCTCACCATCTCGGAACAGCACGCCCATATTGATCCTCGTTTTATTTCTCCTTTTGTCCCAAAGTTTGCTTGCCATGGTCCATAATGTTTGAATGAAACAACAACGGCGTGCCGCTAGACGTTACGCAGCTGTCCGCGTCTGTTGCCATGGTTACTATGCAGCGCAAGGAAACCAGGGATAACGCAGATATTACATCATTGACACGCGACAAGGGAGGGACGGGCACTATTTAAAATTGTGAATTTATCTGAATTTACAAATTCTTGGAAACATTCAGGATAATGTAAGTACACAGCTGAACGAAGTATATAACACTACGCAAGTGGTTTTTGAATATTTTAATATAAAAATCTTACATATTGTGCCTTTAACAAACCCCCAACCATAAACAAAATCTTGTGTACTATAGATTAAAACTTAAAATATTAAAATTTGCCATTGTGTGCTGCAAACATTGTTGCTTCATTGTTTGTGATGTTC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU217664 True 611 lncRNA 0.39 1 3910840 3911450

Neighbor

gene id symbol gene type direction distance location
CI01000043_03897396_03898300 NA coding upstream 11608 3897331 ~ 3899232 (+)
CI01000043_03873745_03893313 GRAMD2, GRAMD2A coding upstream 16809 3873474 ~ 3894031 (+)
CI01000043_03806399_03849817 ZNF609 coding upstream 60313 3804542 ~ 3850527 (+)
CI01000043_03733099_03736327 NA coding upstream 174465 3732432 ~ 3736375 (+)
CI01000043_03718802_03730935 TRIP4 coding upstream 179202 3717960 ~ 3731638 (+)
CI01000043_03945066_03946592 NA coding downstream 33275 3944725 ~ 3946592 (+)
CI01000043_04053003_04164783 NEO1A, NEO1 coding downstream 141553 4053003 ~ 4164783 (+)
CI01000043_04175414_04178862 NA coding downstream 263188 4174638 ~ 4179001 (+)
CI01000043_04227678_04227983 NA coding downstream 314196 4225646 ~ 4228065 (+)
CI01000043_04261984_04277105 PACSIN3 coding downstream 350534 4261984 ~ 4277989 (+)
G191281 NA non-coding upstream 255155 3655461 ~ 3655685 (+)
G191278 NA non-coding upstream 258607 3651925 ~ 3652233 (+)
G191277 NA non-coding upstream 259371 3651240 ~ 3651469 (+)
G191275 NA non-coding upstream 261268 3649076 ~ 3649572 (+)
G191273 NA non-coding upstream 264576 3645838 ~ 3646264 (+)
G191685 NA non-coding downstream 32291 3943741 ~ 3944009 (+)
G191645 NA non-coding downstream 100866 4012316 ~ 4041221 (+)
G191647 NA non-coding downstream 143774 4055224 ~ 4081927 (+)
G191646 NA non-coding downstream 230744 4142194 ~ 4144967 (+)
G191637 NA non-coding downstream 257347 4168797 ~ 4172501 (+)
G191670 NA other upstream 874 3903233 ~ 3909966 (+)
G190272 NA other upstream 1467130 2441862 ~ 2443710 (+)
G190241 NA other upstream 2218361 1683556 ~ 1692479 (+)
G191644 NA other downstream 396498 4307948 ~ 4350614 (+)
G192454 NA other downstream 1081563 4993013 ~ 4993356 (+)
CI01000043_05114193_05114497 BOLA3 other downstream 1202436 5114193 ~ 5114497 (+)
CI01000043_05169578_05171795 CLEC3A other downstream 1258155 5169578 ~ 5171848 (+)
G192489 NA other downstream 1555867 5467317 ~ 5552624 (+)

Expression


Co-expression Network