G192109


Basic Information

Item Value
gene id G192109
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 4331911 ~ 4332726 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU218131
CTCATCAGACCACAGGACATGTTTCCAGTAATCATCTTTAGAAGAGGCTTCCTTCTGGGACGACAGCCATGCAGACCAATTTGATGCAGTGTGCGGCGTATGGTCTGAGCACTGCCAGGCTGACCCCCCACCCCTTCAACCTCTGCAGCAATGCTGGCAGCACTCATACGTCTATTTCCCAAACACAACCTCTGGATATGACGCTGAGCACATGCACTCAACTTGTTTGGTCGTCCATGGCGAGGCCTGTTCTGAGTGGAACCTGTCCTGTTAAACCGCTGTATGGTCTTGGCCACCGTGCTGCAGCTCAGTTTCAGAGTCTTGGCGAACTTCTTATAGCCTACACCATTGTTATGTAGAGCAACAATTATTTTTTACAGATCCTCAGAGAGTTCTTTGCCATGAGGTGCCATGTTGAACTTCCAGTGACCAGTATGAGAGAGTGAGAGCGATAACACCAAATTTAACACACCTGCTCCCCATTCACACCTGAGACCTTGTAACACTAACGAGTCACATGACACCGGGGAGAGAAAATGGCTAATTGGGCCCAATTTGGACATTTTCACTTAGGAGTGTACTCACTTTTGTGGCCAGCGGTTTAGACATTAATGGCTGTGTGTTGAGTTATTTTAAGGGGACAGCAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU218131 True 648 TUCP 0.48 2 4331911 4332726

Neighbor

gene id symbol gene type direction distance location
CI01000043_04292518_04294909 NA coding downstream 37002 4292183 ~ 4294909 (-)
CI01000043_04185319_04204509 CSNK1G1 coding downstream 126870 4185108 ~ 4205041 (-)
CI01000043_04168896_04172758 RS17, RPS17.S, RPS17 coding downstream 159153 4168871 ~ 4172758 (-)
CI01000043_03912564_03929022 CHRNA7 coding downstream 402889 3911926 ~ 3929022 (-)
CI01000043_03782397_03783190 NA coding downstream 547786 3781312 ~ 3784125 (-)
CI01000043_04486893_04491014 CCND1.L, CCND1, CCND1.S coding upstream 153875 4486601 ~ 4491988 (-)
CI01000043_04701996_04719324 TPCN2 coding upstream 369270 4701996 ~ 4719324 (-)
CI01000043_04725324_04728884 NA coding upstream 392343 4725069 ~ 4728884 (-)
CI01000043_04738890_04742485 NA coding upstream 406164 4738890 ~ 4743454 (-)
CI01000043_04821316_04858515 MMP15 coding upstream 488348 4818251 ~ 4859482 (-)
G191941 NA non-coding downstream 362569 3966947 ~ 3969342 (-)
G191938 NA non-coding downstream 372952 3958727 ~ 3958959 (-)
G191937 NA non-coding downstream 373348 3958336 ~ 3958563 (-)
G191932 NA non-coding downstream 387913 3943779 ~ 3943998 (-)
G191929 NA non-coding downstream 404432 3927266 ~ 3927479 (-)
G192118 NA non-coding upstream 20158 4352884 ~ 4353110 (-)
G192126 NA non-coding upstream 48806 4381532 ~ 4381735 (-)
G192138 NA non-coding upstream 67220 4399946 ~ 4400234 (-)
G192163 NA non-coding upstream 92740 4425466 ~ 4425793 (-)
G192243 NA non-coding upstream 206968 4539694 ~ 4540445 (-)
G191296 NA other downstream 1282047 3048372 ~ 3049864 (-)
CI01000043_02245322_02249390 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 2082431 2244688 ~ 2249480 (-)
G189881 NA other downstream 3448743 814747 ~ 883168 (-)
G192980 NA other upstream 1123771 5456497 ~ 5458414 (-)
G192947 NA other upstream 1260955 5593681 ~ 5618440 (-)
G193313 NA other upstream 1922846 6255572 ~ 6256279 (-)
G193922 NA other upstream 2230614 6563340 ~ 6566039 (-)
G194100 NA other upstream 3098160 7494997 ~ 7498973 (-)

Expression


Co-expression Network