G192654


Basic Information

Item Value
gene id G192654
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 5040141 ~ 5044495 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU218726
GGTGATTCAACGCATTTAATTAAGAGCAGAAACTAAACTCTGAAGGAAAGTGGCTCTCCAGTACCATGAGGTACCCTGGTGAAACACATCAACAAACGTGAAGGTAGGGATGGCAACCAGTAAGTGAGGCTATATTTTAATGCTTTGGTGAATAAGTAAAATTTCGCAATTGTCCTTGTCACAAGGCCCTGAGGATATCTAAGCAGTTAGGCACCAGAGAACCATCAAAACTTAGTCTTAAAGGGTTAGTGCACCCAAAAATGAAATTTCTGTCATTAATTACTCACCCTCATGGACCTTTATTGTGGTTATTATATTGCTTTCTATGGGGGATAATAATATAAAAAATAAAAAAAACCTCTTGGACTTGAGATCAAAAGTATCTTAATTTGTGTTCCAAAGATGAACGAAGGTCTTACGGATGTGGAACAACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAACACTTTAAATCATGCTGCTTATCTCCTTGTATTCCTGGAGGCATGCAGAACAATGCATTACGAATTGCAATCAATGGCATGAACATTTTCAATGGAATCACCGTTTTTGCTACTCTTATAATAACTTTCCAAAGTTTGCTAAGATAAGGAGTTTCAAAATGTTCAAGGTGCCCCACCAGCACTGCACATTTTGGACATCCCCAGTCAGGTCATGGAGAGTTAAATAAGGGAGACATCCAAAATGTCCAGTAATAGTTTGAAAAGCCCTGGTTTAGATTGTTTTCACAGTCATAAAACCTGAAAATGTTTATTTTCAAGGAAGTTAGGATGTCTTGGTGGTATTACCAAGACCATGCTTTAGGGACCCTTCACAGCTTCATAAAAAAAAAAAAAAACACATCAAAATAATTTTCTCAACCTTACAACGTGCATGGTATTGGCGTACTTGGCGACATAATTGCTGCTTGCAGCTATATTCTCTGCTTGCTTCAGTTTTTACCCACATGGGGCATAATGATATTGCAAGACTACAGAATTACTAGTCAATCACCCTGATAGTGAAGAAACAACCAATAAGAAATTACTGGAGAAGGCGAACCAATTCAAACCGATTCTCAAATTTAAAGCCGTTTGTTTTTTTTTAATGTTGTGTATACTGATGGTTCATCCATACATCAACCAAATGCTTGAGACCTCCTCAATTCATGCTCCAATGACTTAAATGACTTACAGCGCTTGTAACAATACCTTTATCCAGATTGAACACCAAGTGCATTTTGTTTGGAGCCTAAACATCATTACAAGCAGCAAATGATTGCCACACACTATTATTGAAGCCCTCTGAACACCAACCATTATAGGAGAAGTCACCGTCCAGGTAACAATGTTCCAAATCTTAAATAGTTTTTAACTGAGTTAAAAAATTTGCAGTCTGATACAGAAGGCTAAGAGACCTGAACAATATGAAAGTGCTAGTCATTAATTTACAGAGATCAGGCATCACATAGTGCTATGACAAGTATCCAATATGCTACATTTGAATACACGTTGACACCTTACAAATGCCTCTGGTTGTTTGACCAGGCAACTTAAAAATCAAGTGCCTTGGCTAATTATGTACAATATGAGAATTTTTTTTTTTTTTTTTTGATGAAGAAAAACTTTTGACACACTACTGCCAGAGGTATAATCTTGAAAAGGCCCTTTGGCCCATACAGTGACAATGAATTTGACATTACGTCTCAATTTCAATTCATTAGCCCCCGTCGTATGTGTGTGGGAGCTGTGTATCGCTCTTAATTTTTGGATTCCATAAGACAACATTGTTCAGAGCTTTATTTTCCCCCCCACTTGCTTAGCGTTCAAGTTCTTGGTTTGTTTTCCCAGGCATTGGTTGCTTTCCCACATCTTCTGGTGCTGTTTAAATTTGATAGTCAGATTGAAGAGTGAGAGAGAAGAACCAGTTCTGGAACCACTACTTCAGGGAGCAACACAAGTGTTTTCATTTCACTACATTCAGTCACAGTTAGAAAGGGGAAGAGGGAAGAGAGGACTCAATTCATCCCAGGGGCGCTGCCACCAAAGTTGAAATTGGATGGCACCACGGGAACTGTGAACTTATATCCTCCGTGCTTCTCGATCATCTTTGATTCATGTGCTGCTCGCCGCTGATCAGCAAGTGTTGCAATATCCTGAAGTTGTTTTCTTTGTTCCTCATCGAGACATTGTGTGAGCGCCTGGTACCATGCTGGGTCACGGGCCTGGACATTCTGTATTATGGCTTTGAAGATCTGGTATTCATCAACGAGGTTGTCCTCGTCGTCCACCGAGGTCGTGTAACCCTCGAGAGCGGTCTCCTCTGCGTCGTCTTCTTCCCAGTCTTCATCGCCACCGTCCTCTCCTGCTTGTTTAGCTAGCATTTCAAGGTATTCCTGGCCTTCTTCATCTATGTCATCTTCATCACTGCCCAACTCCGCATTCTCCTCTTCCTCCTCTCCATCCTCTTCATCCTCATCCTCATCATTTTCGTGCTCAGCCCTGCAGGCGTAGGCCCTCTTCAAGCCGTTAAACAGGAGGATGGCTGCAGGAAGGAGCTGACCTGCGACCTGATTAACAGCCTGTGGCCTCTGGTCTAGATCCATGAGCGCACACAGTCCTAACACGCACATCTTTCGATCATGGAGCCCGAGGAAGCAGTCGATGTCTTTGAGCCACTGGGAGATGAAGTGGTTGGTGATGGGCTCGGTGTTGTTGGGGAAGCGCAGATTCTCCAGCGTGTTGAGGAGCAGAGAAGGACTGTAATAGAGCGCAGCGATGGCCACCTGCAGACACATGGTCCTCAACTCGCTGGTCTTCACTTCACGCGTCAAACGCTCCAAAGCGGTCGTTACAAACAAGGGCACCACCTGCAGGAATGGACACCAAACTCATT
>TU218728
GGTGATTCAACGCATTTAATTAAGAGCAGAAACTAAACTCTGAAGGAAAGTGGCTCTCCAGTACCATGAGGTACCCTGGTGAAACACATCAACAAACGTGAAGGTAGGGATGGCAACCAGTAAGTGAGGCTATATTTTAATGCTTTGGTGAATAAGTAAAATTTCGCAATTGTCCTTGTCACAAGGCCCTGAGGATATCTAAGCAGTTAGGCACCAGAGAACCATCAAAACTTAGTCTTAAAGGGTTAGTGCACCCAAAAATGAAATTTCTGTCATTAATTACTCACCCTCATGGACCTTTATTGTGGTTATTATATTGCTTTCTATGGGGGATAATAATATAAAAAATAAAAAAAACCTCTTGGACTTGAGATCAAAAGTATCTTAATTTGTGTTCCAAAGATGAACGAAGGTCTTACGGATGTGGAACAACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAACACTTTAAATCATGCTGCTTATCTCCTTGTATTCCTGGAGGCATGCAGAACAATGCATTACGAATTGCAATCAATGGCATGAACATTTTCAATGGAATCACCGTTTTTGCTACTCTTATAATAACTTTCCAAAGTTTGCTAAGATAAGGAGTTTCAAAATGTTCAAGGTGCCCCACCAGCACTGCACATTTTGGACATCCCCAGTCAGGTCATGGAGAGTTAAATAAGGGAGACATCCAAAATGTCCAGTAATAGTTTGAAAAGCCCTGGTTTAGATTGTTTTCACAGTCATAAAACCTGAAAATGTTTATTTTCAAGGAAGTTAGGATGTCTTGGTGGTATTACCAAGACCATGCTTTAGGGACCCTTCACAGCTTCATAAAAAAAAAAAAAAACACATCAAAATAATTTTCTCAACCTTACAACGTGCATGGTATTGGCGTACTTGGCGACATAATTGCTGCTTGCAGCTATATTCTCTGCTTGCTTCAGTTTTTACCCACATGGGGCATAATGATATTGCAAGACTACAGAATTACTAGTCAATCACCCTGATAGTGAAGAAACAACCAATAAGAAATTACTGGAGAAGGCGAACCAATTCAAACCGATTCTCAAATTTAAAGCCGTTTGTTTTTTTTTAATGTTGTGTATACTGATGGTTCATCCATACATCAACCAAATGCTTGAGACCTCCTCAATTCATGCTCCAATGACTTAAATGACTTACAGCGCTTGTAACAATACCTTTATCCAGATTGAACACCAAGTGCATTTTGTTTGGAGCCTAAACATCATTACAAGCAGCAAATGATTGCCACACACTATTATTGAAGCCCTCTGAACACCAACCATTATAGGAGAAGTCACCGTCCAGGTAACAATGTTCCAAATCTTAAATAGTTTTTAACTGAGTTAAAAAATTTGCAGTCTGATACAGAAGGCTAAGAGACCTGAACAATATGAAAGTGCTAGTCATTAATTTACAGAGATCAGGCATCACATAGTGCTATGACAAGTATCCAATATGCTACATTTGAATACACGTTGACACCTTACAAATGCCTCTGGTTGTTTGACCAGGCAACTTAAAAATCAAGTGCCTTGGCTAATTATGTACAATATGAGAATTTTTTTTTTTTTTTTTTGATGAAGAAAAACTTTTGACACACTACTGCCAGAGGTATAATCTTGAAAAGGCCCTTTGGCCCATACAGTGACAATGAATTTGACATTACGTCTCAATTTCAATTCATTAGCCCCCGTCGTATGTGTGTGGGAGCTGTGTATCGCTCTTAATTTTTGGATTCCATAAGACAACATTGTTCAGAGCTTTATTTTCCCCCCCACTTGCTTAGCGTTCAAGTTCTTGGTTTGTTTTCCCAGGCATTGGTTGCTTTCCCACATCTTCTGGTGCTGTTTAAATTTGATAGTCAGATTGAAGAGTGAGAGAGAAGAACCAGTTCTGGAACCACTACTTCAGGGAGCAACACAAGTGTTTTCATTTCACTACATTCAGTCACAGTTAGAAAGGGGAAGAGGGAAGAGAGGACTCAATTCATCCCAGGGGCGCTGCCACCAAAGTTGAAATTGGATGGCACCACGGGAACTGTGAACTTATATCCTCCGTGCTTCTCGATCATCTTTGATTCTAAAAACAAATCAAACAAAAAGGGGGAAATCAGCAAGCTGAACAAACAGATCTGGTATTCATCAACGAGGTTGTCCTCGTCGTCCACCGAGGTCGTGTAACCCTCGAGAGCGGTCTCCTCTGCGTCGTCTTCTTCCCAGTCTTCATCGCCACCGTCCTCTCCTGCTTGTTTAGCTAGCATTTCAAGGTATTCCTGGCCTTCTTCATCTATGTCATCTTCATCACTGCCCAACTCCGCTGCACAAGAACACAATGAGCCTCATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU218726 False 2912 lncRNA 0.42 5 5040141 5044495
TU218728 True 2396 lncRNA 0.39 2 5041723 5044495

Neighbor

gene id symbol gene type direction distance location
CI01000043_04998580_05006966 TMEM41B coding downstream 33175 4997896 ~ 5006966 (-)
CI01000043_04928149_04970788 DENND5A coding downstream 69353 4928134 ~ 4970788 (-)
CI01000043_04920619_04925317 FAM60AL, FA60A coding downstream 114824 4920394 ~ 4925317 (-)
CI01000043_04821316_04858515 MMP15 coding downstream 180659 4818251 ~ 4859482 (-)
CI01000043_04738890_04742485 NA coding downstream 296687 4738890 ~ 4743454 (-)
CI01000043_05047820_05058629 NA coding upstream 3325 5047820 ~ 5058629 (-)
CI01000043_05064629_05069974 NA coding upstream 20119 5064614 ~ 5069974 (-)
CI01000043_05075648_05078780 NA coding upstream 31153 5075648 ~ 5078796 (-)
CI01000043_05220978_05232290 DKK3A coding upstream 175818 5220313 ~ 5232290 (-)
CI01000043_05447820_05448121 NA coding upstream 402913 5446816 ~ 5450393 (-)
G192785 NA non-coding downstream 47168 4952748 ~ 4992973 (-)
G192776 NA non-coding downstream 153722 4886178 ~ 4886419 (-)
G192772 NA non-coding downstream 159221 4880680 ~ 4880920 (-)
G192764 NA non-coding downstream 173756 4865991 ~ 4866385 (-)
G192817 NA non-coding upstream 64913 5109408 ~ 5113532 (-)
G192812 NA non-coding upstream 67348 5111843 ~ 5112946 (-)
G192820 NA non-coding upstream 74557 5119052 ~ 5122115 (-)
G192813 NA non-coding upstream 115573 5160068 ~ 5160451 (-)
G192815 NA non-coding upstream 116680 5161175 ~ 5162326 (-)
G192109 NA other downstream 707415 4331911 ~ 4332726 (-)
G191296 NA other downstream 1990277 3048372 ~ 3049864 (-)
CI01000043_02245322_02249390 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 2790661 2244688 ~ 2249480 (-)
G189881 NA other downstream 4156973 814747 ~ 883168 (-)
G192980 NA other upstream 412002 5456497 ~ 5458414 (-)
G192947 NA other upstream 549186 5593681 ~ 5618440 (-)
G193313 NA other upstream 1211077 6255572 ~ 6256279 (-)
G193922 NA other upstream 1518845 6563340 ~ 6566039 (-)
G194100 NA other upstream 2386391 7494997 ~ 7498973 (-)

Expression


Co-expression Network