G192373


Basic Information

Item Value
gene id G192373
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 5047193 ~ 5050199 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU218415
CCAATGCCCTGCAGAGTTTAGCTCCAACCCTGATCAAACACATCTGAACAGGGCAGCAAGCTAATCAAGGTCTTCAGGATCACTAGAAAATCACAGGGTTTGAGCTAAACTCTGCAGGGCAGTGGCCCTCCAGGACCGGATTTGAGGAACCCTGACATAAGTAGTATGGACTACTACCTAGTCCTTCCAGGACAGGGGTTTTCAAACCCCCAGCCCTGCACATTTTGTATGTCTCCCTTATTTGACACACCCACTTCAGGTCTTGCTGTCTCTGCTGATGAGTTGAATCAGGTGTGTTAGATAAGGGAGACATACAAAAGGGTTGGGGGTCCTCCAGGACAGGTTTAAAAACCCCTGTTCCAGGAGCTTGTAGGCCAGTGGTGCCAAACTCACATCCAGGAGGATCCCAGTCCTGCAGAGTTTAGCTTCAACCCTAAATAAAGACACCTGGTCCAGCTAATCAAGTCCTTCGGGATTACTTGATGACTACATGGAGGTGTGTTGGAGCAGGGTTGGAGCTAAACTGCAGAACTGTGGGCTTTCAGGAGCTTCCTCTGCTATTGGCCCTGATTATAGTCTATTTTCATGGTCTACATTCCACAAATTGCGAGGGGGTATGATACTCACAGCAATGGAATAGGCCAAAAACATGATGGTCATGACCACGATGAAGCCAGAGATATCTGTCCATGCTCGCTGCAGTGTAGAGGTGATCATGTGTAGCTTGGGGTTGAGTCTCAGTAGATGCCACAGTTTGATGGTGGCCAGCAGAACTAAGAAGGCTATCAGATAGCCCAGTACTGCATCTGCCGTGGCAGTTTCATAAAAACTGGCAAACCTGTTAGAGAAGCAGTTGTATTAATTGAGTTTCAAGTATAAAGTGTATGTTGTGCAGTATGTAGAAGTCTAGTATTCCATTCTGAACATAGTGATTGATCTGGAAGAGTTTATGGCTTTCACTCACATGTCTTTATTATTTTGGTAGTAGTTAATGTCCCGGTTACCCAATATCGTCCTCTTGACAAACACAGATAATGCGCTCCAACTTAGAATAATGATGGCCAATTCCAAAAGATTCCACTTGCTTCTGAAATATCCCCATTTCTGCTGCTTCATTAGTGTGCCCTATTAAAGCCAGAAAATACTGTGCATTATAGCTTCACTTATGCAAATACACCATCTTATTTTAGCATTCCATGAGAGAGCTGACCTGCACAAACATGTAGTAGAGAATGAAGAGGAAATAGATGGCCTCTGATGCCATAACAAATACATGAAAGCCACCAGTGGACTGATAAAGATGGACAGTCTGCACCTCACTACGATATTGAAATGCACCTGCAAAAACAACAAAATTAGTGTGAATCCAGACTTTGAGAACATGAGGAACTCATGAGAATTTCAAAAGGAGATGCCTCACCTACTCCTGTGGTCTCAAATATGAGAGTCACAATGCAGAAGAGGTTGACATTTGCATTATAAACTGTGAACTCAACAAAGACCGCCCGTGTATACACGTCCAGCCAGGTGTTGTCAAGAAGATACTGAAGAAGTCTGTTGAATGGGAATGAAAAGATCAATTGTTCTAACTTCTACTTTGAAACTAGATTACATATTGTTACACATTATACTACCTGCTTGCATTCTTTTGATCCGGGCCGAGGTCCACCACAAATCCACCACCCTTATAAAGGGCCAGTCCACCCCAAACAGGGTTTGCCCGGAGTTTGGCCTGAGTTTGGTAGTGCCACGGTGTGAGTACAGCCTTAGATCCATTCACATTTTTTGTCTGGTTCCAGACTGGACTATAAGAGCTCATGTCCTCCGCTTCCCAGGAGTATGGGGCATGGCAATCAGGAATAGCATACCGCATGGGCTTGGCAATTTTACAAGAGTCTTTTCTCACCCTAACCTGACGGAGTCGAGCATTGCCAACAAGTTTTGAGTTTCCATCTGTTATGAAGCCTGAAAGGTAACATACAACAAAGTGCATTTGGGTCTAGAGGTAAAATAAACAAGCAGTGTTTAACCTTGAAAAAGTAGACCAGGGGATTTCAAACCTGTCCTGGAGGATCCCCAGCCCTGCACATTTTGTATTTTTCACTTATTTGACACACCCACTTCAGGTATTGCTGTTTCTACTAATGAGCTGATGAGTTGAATCAGGTGTGTTAAGGCCGGAACACACCAAGCCGACGCCGACGAACTAGTGGCGACGAAAGCAGATGCGGGGTTGGCTCACGTCAGCAGTGTCTGTGTCCAAAGTTGCCCTGACACACCAAACCGACACCCGACGGCCAAGTAGCACGTCATTTTGCGCCTGCACAAGATGAAATGCATTTCCGTACCAGCAGGTGGCAGTAGCTAAATGGCCAATCAGAATGATCAGATGACCCGACGGACCGACGAGCTCTGACACCGATTCAACATTTCGAATCGGCCGAAAAAAAGCCAACGAGGACCAACTTCAGCCGACAGTGCGGAACACACTGAGAAAACTTAGTCGGCCGACGAACAAAAACTGCCTGACGGCCGACTATCGGCTTGGTGTGTTCTGGCCTTTAAATGAAAGACACATACAAAATGTGCAGGGTTGGGGGTTCTCCAGGACAGGTTTGAAAACCCCTGAAGTAGACAATGTAGACAATACATATTGAAGGAATACCTGGATATTGCCCAAACAGATTACTGAGCAAGGAGGATTTTGCCCAGTTGAATATATCTTTGTGGTTCATACTCTCTGAAATGCCATTGCTGAAGCTCTGCCGGATGTGCTGAGTGAGGTAGTATGCATGTGGATCTCGCTGACCATATGCGACCAAGAGAAGCATCCACAGGAATCCCACATAAACTGCAATGTAAAAGGCTGTGTCAAACAAGCTGATCTTTCCATTAATGAAAGAGTAATTGTGTCTTTCTTACTGAGAATCTCCCGGATGAGTGCGAAAACTTTCTGCTCCTTGATCATGTTGTTTCTCATCCTTTCTATGTCGGTGGGAGGAGGAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU218415 True 3007 lncRNA 0.45 1 5047193 5050199

Neighbor

gene id symbol gene type direction distance location
CI01000043_05025912_05042461 IPO7 coding upstream 4517 5025912 ~ 5042676 (+)
CI01000043_04902104_04912376 NA coding upstream 134817 4902104 ~ 4912376 (+)
CI01000043_04887448_04901355 NA coding upstream 145506 4887448 ~ 4901687 (+)
CI01000043_04873413_04879547 NA coding upstream 167591 4873413 ~ 4879602 (+)
CI01000043_04818939_04819238 NA coding upstream 226524 4818939 ~ 4820669 (+)
CI01000043_05088157_05094871 BCO1L coding downstream 37958 5088157 ~ 5095162 (+)
CI01000043_05099471_05111989 BCO1 coding downstream 45526 5095725 ~ 5112379 (+)
CI01000043_05114193_05114497 BOLA3 coding downstream 63994 5114193 ~ 5114497 (+)
CI01000043_05119129_05131257 VAT1L coding downstream 68930 5119129 ~ 5131257 (+)
CI01000043_05169578_05171795 CLEC3A coding downstream 119379 5169578 ~ 5171848 (+)
G192461 NA non-coding upstream 39460 5007426 ~ 5007733 (+)
G192455 NA non-coding upstream 52049 4994909 ~ 4995144 (+)
G192416 NA non-coding upstream 166685 4880199 ~ 4880508 (+)
G192385 NA non-coding upstream 219101 4811329 ~ 4828092 (+)
G192356 NA non-coding upstream 282539 4764183 ~ 4764654 (+)
G192466 NA non-coding downstream 3996 5054195 ~ 5054424 (+)
G192469 NA non-coding downstream 6160 5056359 ~ 5056568 (+)
G192477 NA non-coding downstream 19139 5069338 ~ 5069553 (+)
G192478 NA non-coding downstream 20679 5070878 ~ 5071097 (+)
G192479 NA non-coding downstream 25543 5075742 ~ 5078598 (+)
G192454 NA other upstream 53837 4993013 ~ 4993356 (+)
G191644 NA other upstream 696579 4307948 ~ 4350614 (+)
G191670 NA other upstream 1137227 3903233 ~ 3909966 (+)
G190272 NA other upstream 2603483 2441862 ~ 2443710 (+)
G190241 NA other upstream 3354714 1683556 ~ 1692479 (+)
G192489 NA other downstream 417118 5467317 ~ 5552624 (+)
G193125 NA other downstream 1155489 6205688 ~ 6210893 (+)
G193344 NA other downstream 1259953 6310152 ~ 6310538 (+)

Expression


Co-expression Network