G192820


Basic Information

Item Value
gene id G192820
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 5119052 ~ 5122115 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU218909
CCAAATCCCAATTTTTGTACAGGCTGCTTCAAAAGTTTCTTGACAAACCCTATCGCTCAAAGCAACAGACTTACCACCCCACCTCCTGCTGAGTGAACTAATACAGACATCCCCTCCTGGAGATTGGCCACTTCAAACAGCATCATGTAGGCAGCCACGAAGTTCATAGAGAAGGCAGCCGCCTCTGGGAATGTCATGTCGTCTGGGATCTTATACACGAAATCCAATGGTGTGCAAACCACCTCTGCCCAAGCATTGTAATTTACAAAGGCCATCACTCTGTCACCTATCTCAAAGCCTGTGGTATTTTCTCCCACACTCTCTACAATCCCAGAACACTCAAATCCAGGCACAAGAGGTGTTTTTGGAGGATTATCTATATTTCCTTGTCGTACCATTAGATCAAGAAAGTTCAGTCCACATGCTTTCACGCGAATTTTGACTTCTCCTTCTTGGGGCTCTGGCATTGGTTTCTTGGTGACTTTGAGTTTGTTTAGACCACCAAAGCCCGTCAGAACAACAGCCCGCATTTCTTTTGAATCTACTACCGTAGAAACGGGATTCTCCGGCTCCTTCTGGTCTATCATTTGCTCGGTCTCTTCAACAATCTCAGTCCCCTCCTTTTCCATGTCTGCAGATGATGTGAACAGCCTAACGGTCTGCCGAAGCCCTGCTGGAGACTGCGCTCTCTTTGCTGCTCCTGCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU218909 True 706 lncRNA 0.47 3 5119052 5122115

Neighbor

gene id symbol gene type direction distance location
CI01000043_05075648_05078780 NA coding downstream 40256 5075648 ~ 5078796 (-)
CI01000043_05064629_05069974 NA coding downstream 49078 5064614 ~ 5069974 (-)
CI01000043_05047820_05058629 NA coding downstream 60423 5047820 ~ 5058629 (-)
CI01000043_04998580_05006966 TMEM41B coding downstream 112086 4997896 ~ 5006966 (-)
CI01000043_04928149_04970788 DENND5A coding downstream 148264 4928134 ~ 4970788 (-)
CI01000043_05220978_05232290 DKK3A coding upstream 98198 5220313 ~ 5232290 (-)
CI01000043_05447820_05448121 NA coding upstream 325293 5446816 ~ 5450393 (-)
CI01000043_05552260_05560675 BTBD10B, BTBD10 coding upstream 429684 5551799 ~ 5560675 (-)
CI01000043_05567462_05568782 PTH1B coding upstream 445256 5567371 ~ 5568980 (-)
CI01000043_05620626_05686035 GALNT18B, GALNT18 coding upstream 498511 5620626 ~ 5686035 (-)
G192817 NA non-coding downstream 5520 5109408 ~ 5113532 (-)
G192812 NA non-coding downstream 6106 5111843 ~ 5112946 (-)
G192654 NA non-coding downstream 74557 5040141 ~ 5044495 (-)
G192785 NA non-coding downstream 126079 4952748 ~ 4992973 (-)
G192776 NA non-coding downstream 232633 4886178 ~ 4886419 (-)
G192813 NA non-coding upstream 37953 5160068 ~ 5160451 (-)
G192815 NA non-coding upstream 39060 5161175 ~ 5162326 (-)
G192836 NA non-coding upstream 42224 5164339 ~ 5197468 (-)
G192858 NA non-coding upstream 73354 5195469 ~ 5199638 (-)
G192851 NA non-coding upstream 151606 5273721 ~ 5282134 (-)
G192109 NA other downstream 786326 4331911 ~ 4332726 (-)
G191296 NA other downstream 2069188 3048372 ~ 3049864 (-)
CI01000043_02245322_02249390 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 2869572 2244688 ~ 2249480 (-)
G189881 NA other downstream 4235884 814747 ~ 883168 (-)
G192980 NA other upstream 334382 5456497 ~ 5458414 (-)
G192947 NA other upstream 471566 5593681 ~ 5618440 (-)
G193313 NA other upstream 1133457 6255572 ~ 6256279 (-)
G193922 NA other upstream 1441225 6563340 ~ 6566039 (-)
G194100 NA other upstream 2308771 7494997 ~ 7498973 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034199 vat1l coding NC_007118.7 CM002891.2 65309738 ~ 65374668 (+)