Gene
RNA
| Item | Value |
|---|---|
| gene id | G192815 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000043 |
| NCBI id | null |
| chromosome length | 7746009 |
| location | 5161175 ~ 5162326 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| protein Mdm4 isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU218902 | True | 1126 | lncRNA | 0.34 | 2 | 5161175 | 5162326 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000043_05075648_05078780 | NA | coding | downstream | 82379 | 5075648 ~ 5078796 (-) |
| CI01000043_05064629_05069974 | NA | coding | downstream | 91201 | 5064614 ~ 5069974 (-) |
| CI01000043_05047820_05058629 | NA | coding | downstream | 102546 | 5047820 ~ 5058629 (-) |
| CI01000043_04998580_05006966 | TMEM41B | coding | downstream | 154209 | 4997896 ~ 5006966 (-) |
| CI01000043_04928149_04970788 | DENND5A | coding | downstream | 190387 | 4928134 ~ 4970788 (-) |
| CI01000043_05220978_05232290 | DKK3A | coding | upstream | 57987 | 5220313 ~ 5232290 (-) |
| CI01000043_05447820_05448121 | NA | coding | upstream | 285082 | 5446816 ~ 5450393 (-) |
| CI01000043_05552260_05560675 | BTBD10B, BTBD10 | coding | upstream | 389473 | 5551799 ~ 5560675 (-) |
| CI01000043_05567462_05568782 | PTH1B | coding | upstream | 405045 | 5567371 ~ 5568980 (-) |
| CI01000043_05620626_05686035 | GALNT18B, GALNT18 | coding | upstream | 458300 | 5620626 ~ 5686035 (-) |
| G192813 | NA | non-coding | downstream | 724 | 5160068 ~ 5160451 (-) |
| G192820 | NA | non-coding | downstream | 39060 | 5119052 ~ 5122115 (-) |
| G192817 | NA | non-coding | downstream | 47643 | 5109408 ~ 5113532 (-) |
| G192812 | NA | non-coding | downstream | 48229 | 5111843 ~ 5112946 (-) |
| G192654 | NA | non-coding | downstream | 116680 | 5040141 ~ 5044495 (-) |
| G192836 | NA | non-coding | upstream | 2013 | 5164339 ~ 5197468 (-) |
| G192858 | NA | non-coding | upstream | 33143 | 5195469 ~ 5199638 (-) |
| G192851 | NA | non-coding | upstream | 111395 | 5273721 ~ 5282134 (-) |
| G192859 | NA | non-coding | upstream | 125495 | 5287821 ~ 5294704 (-) |
| G192852 | NA | non-coding | upstream | 132804 | 5295130 ~ 5299604 (-) |
| G192109 | NA | other | downstream | 828449 | 4331911 ~ 4332726 (-) |
| G191296 | NA | other | downstream | 2111311 | 3048372 ~ 3049864 (-) |
| CI01000043_02245322_02249390 | GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP | other | downstream | 2911695 | 2244688 ~ 2249480 (-) |
| G189881 | NA | other | downstream | 4278007 | 814747 ~ 883168 (-) |
| G192980 | NA | other | upstream | 294171 | 5456497 ~ 5458414 (-) |
| G192947 | NA | other | upstream | 431355 | 5593681 ~ 5618440 (-) |
| G193313 | NA | other | upstream | 1093246 | 6255572 ~ 6256279 (-) |
| G193922 | NA | other | upstream | 1401014 | 6563340 ~ 6566039 (-) |
| G194100 | NA | other | upstream | 2268560 | 7494997 ~ 7498973 (-) |
