G192858


Basic Information

Item Value
gene id G192858
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 5195469 ~ 5199638 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU218948
TTTCTTTTTTTGGTTGGGACTAAATGAAACCAAGAGAACCGAAATACAAGTGTGAACACACCCCTAATTAAACTCTTCAGATACCGAATTTTGGCCAATTTCTGTTGCGCACTGCTGGAACAGCGTTTGCGTTGAGAGTGCCTATGATGCCAAAAATGCTGTCTAGGTAGGCAGCTCATTAGGGTTTGGAACAGAGCCCAAGTCTCCATGGCATGCAGTTACGGAACTGAGCACTGGTTTTGCTGTGCAGGGACTTTACCTTGCATGTGTTGCGCTCGATCTCTCTTTGCCTCTTCTCCTGCTCCTCAGATTCTTTCTCTCGTTGCACCAGTCTCTTTATGTGCTCTGGGAAGTCTTCCACTTCCAGGAATTTTGAATTTCTGGAGGGGTCTTTTAGTCTGTACATGAGCATGTATGCATTTGTAGAGCTGGCAAAGGCACTGGAGTAATAGCCTCTGCTCCCTGAGGATCCGCCATATGTCTTCCGGATGTCATCCTGCGTGATCTTGCTGACGTGCTGGTCGTTGAAGCTGTACCACTGGCTGTCACTGAAGGACTTGATGCAGGCATAGTAGTGCCCGCCTGCAGCACTCCCAGAATGCACCATGACCGAGAAGAGTTCAAAGGTCAAAGAGCTCTTTGGTTTGAGCACCCGCTCTGCGCTGCTGGTGTTATCCAGACAGATGCCCTCGTCCACGGCATCATCTGTGGAGAAATCATTGCTCATCTGGTCACTGTGGCAGCTTCCTTCATTCTCCGCTCCACTGTCAGTGCAGCTCTCTGTCTGAGGTGATTTCTCATCCTCGACGTCGATGAAAGGGCTCATGTCCAGCTCCTCAGGGAAGGTCATGCGGTCATTGAGTTTAATGCGGTGCATAGTGGTGTAATCAAAGTCAAAGCGTTTCAGCTGCAGAGTCAGCAGGTATGGGAAATGGAGGAATCTCAGGCCTTTGCGGGCGTCACATTTCTTTTTGCAGCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU218948 True 980 lncRNA 0.50 7 5195469 5199638

Neighbor

gene id symbol gene type direction distance location
CI01000043_05075648_05078780 NA coding downstream 116673 5075648 ~ 5078796 (-)
CI01000043_05064629_05069974 NA coding downstream 125495 5064614 ~ 5069974 (-)
CI01000043_05047820_05058629 NA coding downstream 136840 5047820 ~ 5058629 (-)
CI01000043_04998580_05006966 TMEM41B coding downstream 188503 4997896 ~ 5006966 (-)
CI01000043_04928149_04970788 DENND5A coding downstream 224681 4928134 ~ 4970788 (-)
CI01000043_05220978_05232290 DKK3A coding upstream 20675 5220313 ~ 5232290 (-)
CI01000043_05447820_05448121 NA coding upstream 247770 5446816 ~ 5450393 (-)
CI01000043_05552260_05560675 BTBD10B, BTBD10 coding upstream 352161 5551799 ~ 5560675 (-)
CI01000043_05567462_05568782 PTH1B coding upstream 367733 5567371 ~ 5568980 (-)
CI01000043_05620626_05686035 GALNT18B, GALNT18 coding upstream 420988 5620626 ~ 5686035 (-)
G192815 NA non-coding downstream 33143 5161175 ~ 5162326 (-)
G192813 NA non-coding downstream 35018 5160068 ~ 5160451 (-)
G192820 NA non-coding downstream 73354 5119052 ~ 5122115 (-)
G192817 NA non-coding downstream 81937 5109408 ~ 5113532 (-)
G192851 NA non-coding upstream 74083 5273721 ~ 5282134 (-)
G192859 NA non-coding upstream 88183 5287821 ~ 5294704 (-)
G192852 NA non-coding upstream 95492 5295130 ~ 5299604 (-)
G192847 NA non-coding upstream 104604 5304242 ~ 5307924 (-)
G192906 NA non-coding upstream 108877 5308515 ~ 5308880 (-)
G192109 NA other downstream 862743 4331911 ~ 4332726 (-)
G191296 NA other downstream 2145605 3048372 ~ 3049864 (-)
CI01000043_02245322_02249390 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 2945989 2244688 ~ 2249480 (-)
G189881 NA other downstream 4312301 814747 ~ 883168 (-)
G192980 NA other upstream 256859 5456497 ~ 5458414 (-)
G192947 NA other upstream 394043 5593681 ~ 5618440 (-)
G193313 NA other upstream 1055934 6255572 ~ 6256279 (-)
G193922 NA other upstream 1363702 6563340 ~ 6566039 (-)
G194100 NA other upstream 2231248 7494997 ~ 7498973 (-)

Expression


Co-expression Network