G192980


Basic Information

Item Value
gene id G192980
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 5456497 ~ 5458414 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU219083
ATAATTCATAAACCATTCTGCAATGTAAAATTGATTTTTACAGTGCTGGAACGTGTCCATCACACTTGCTTAAAATGTTGTCTTGTGCAGAAAAAAAAATCCAACCACATTTAAAGAGATTTCAATCCTGCATGTGTTTCGCAAAGTTACCAATTCATGTCTAGATGAAATTAACACTGATTCTTGTAGACATCAACATAAAAAGAAATGAATAAACTGACCAAGGATGCTCAATAAGTGCATAGTTATGATCATTTTGATTTGCAGGAAAGTACTTTTCTTACTTTCCCAGCACTGAAAATGTAAAAACTGTGCCAGTGTTGTGTTGTTCATTTCAGTGATTCAGCCAGGGACAATATGAATGCTTTTCACACTAAAGACTCACAGACGGGTGTGATATCTGAGTCTTGACTGTGCATTGAACTGAGTCCCGTATCTGAGTCGTCATCATTCACGTCACATGTTTTTGAAAGCCCTCTTGCCTGTTCCACCCACACACTACTGTCCCCCTCGAGAGGCATCAATCTGTCTGCTTCTATTGTGTTTTCCTCTTTCAGCTCCGCATTGTCTGCACTGTCCTCCTCCAAATCCAAAGAGTTCACTTTCTCCATTAAATCCATTAGTTCTTTCTCTTTTGCCCCCCATATCTCCTCGGTCAAGTCCAAATCGTTCCTTATAGCCTCCAAGTCGGTGTTCAGCCGCAGACCGATGTACAAGCTGGTGTCGAGTTGGGTCCTGATCCTCTCCTCTTCCAAAAGCAAGTCGCCGTCATCCACCGCTGAAGATCCTGCATCATTTTCTTGAGTTGGGACCGCTTCTTGAGAAGTGGTTTCAGCGTCTTTATTCGCGAGTTCCTCGTGCCTTCTTTTCATCCATCTCTGGTTGAGTTCCTCTTGTATCTCAGTTGTGATGCTCTCCATGAGGGCCTCGTGCTCAGCCAGCTCTTCTTGCAGTTTGATGACCTCCTCGCATCTCTGAGCGTATTCCTCAAACTGTGCGAGAGCTTCTTCAGGGCTGGTTTTGTCCCCCTCACCAACTTTATCAGGGTTGGCGTCCACTAAATACGTATCCTGAACATAGTTGATCCCGTGCATCTTCATTCTATCAAAATGAACTTTAGCCTCATACCTGTCGATTTCCCTGTCGAGCTCTTTTATCCTCTGAATCTGCTGGCGGATGGTGTGATCTTGAGAAATGACCAGGTGCACAAGGGTCTCCATCTTCTCCATACATGATGCGTCCTTGGATGCAGCCTGAGCTCTTTTCTTGTTGATTTTATCCAATTTTCTGAACGCTTTCCTTACTATCCGTCTTTGTTTCTCCTGTGACAGAGCCATGGTCACTCTTGCGGTCCCCTTGTAGACACACGGGCTCTCCTTGCTGAGAACGACGCGCGCCTCTGCGCTCCGCGGCCCGTTGCTCGGGAGAGATGCCTCGTTTTTCACCAGCACGAACTGGACGTTTTCTTGTTCCTCTCCCCACGCGCCCCACAGTCGCAGGATCTTGGTCTTGTTCGGTAAAATCCTTTCGAACCCTCTCCACTTCTCCACGATGCAGTAGGACTGAGGAGACCCCGAGAGAGACACGCGCGGCTCCAGGTTCTGCTCCTCCAGTAAAACCCCGATCACATCTGCGCAGGTCGTGCGTTTCGACAAGCCCGACACGAGCTTCTCCTCGCGACAAACCCACACTGAAATTTTACTCTCCTCTGCCTCCATCTCGCAGACTGATAGTTAATGTCCCAGTAAAAGTTTCCTGGTGCAGGAAATTATTCAGGTGAAGTGAAAACTATTATGAAATAGAAATATTGTATGAGATGTCAAGGGTTAATCCACACTGTTGAAAAAAAAAAAAAAAATGTTGTTTCGGTCCGTAAACGAATTAAAGAGTTCCTCATGCTCCAGAGTTGTCAGGTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU219083 True 1918 TUCP 0.46 1 5456497 5458414

Neighbor

gene id symbol gene type direction distance location
CI01000043_05447820_05448121 NA coding downstream 8376 5446816 ~ 5450393 (-)
CI01000043_05220978_05232290 DKK3A coding downstream 224207 5220313 ~ 5232290 (-)
CI01000043_05075648_05078780 NA coding downstream 377701 5075648 ~ 5078796 (-)
CI01000043_05064629_05069974 NA coding downstream 386523 5064614 ~ 5069974 (-)
CI01000043_05047820_05058629 NA coding downstream 397868 5047820 ~ 5058629 (-)
CI01000043_05552260_05560675 BTBD10B, BTBD10 coding upstream 93385 5551799 ~ 5560675 (-)
CI01000043_05567462_05568782 PTH1B coding upstream 108957 5567371 ~ 5568980 (-)
CI01000043_05620626_05686035 GALNT18B, GALNT18 coding upstream 162212 5620626 ~ 5686035 (-)
CI01000043_05736025_05736195 NA coding upstream 275991 5734405 ~ 5736195 (-)
CI01000043_05898219_05903612 CTR9 coding upstream 439805 5898219 ~ 5903612 (-)
G192934 NA non-coding downstream 18043 5424092 ~ 5438454 (-)
G192933 NA non-coding downstream 89694 5366356 ~ 5366803 (-)
G192927 NA non-coding downstream 96491 5359759 ~ 5360006 (-)
G192921 NA non-coding downstream 106674 5348535 ~ 5349823 (-)
G192981 NA non-coding upstream 1910 5460324 ~ 5460610 (-)
G193000 NA non-coding upstream 52447 5510861 ~ 5512131 (-)
G192986 NA non-coding upstream 74930 5533344 ~ 5539762 (-)
G193039 NA non-coding upstream 305617 5764031 ~ 5764256 (-)
G193058 NA non-coding upstream 332862 5791276 ~ 5791490 (-)
G192109 NA other downstream 1123771 4331911 ~ 4332726 (-)
G191296 NA other downstream 2406633 3048372 ~ 3049864 (-)
CI01000043_02245322_02249390 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 3207017 2244688 ~ 2249480 (-)
G189881 NA other downstream 4573329 814747 ~ 883168 (-)
G192947 NA other upstream 135267 5593681 ~ 5618440 (-)
G193313 NA other upstream 797158 6255572 ~ 6256279 (-)
G193922 NA other upstream 1104926 6563340 ~ 6566039 (-)
G194100 NA other upstream 1972472 7494997 ~ 7498973 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035223 NA non-coding NC_007118.7 CM002891.2 65934608 ~ 65941800 (-)