XLOC_009346 (or118-2)



Basic Information


Item Value
gene id XLOC_009346
gene name or118-2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31320017 ~ 31323932 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00018374
TTAGACTGAATACTTATACATCTTTATATTtaactttaacatttaatcaGTTAAGTAACTTACAAGGACTAATAGATGTAATTTAAAGAAATGTGCATCTGAAATTTGAATTTAATGAgaatattattcaatatttacaGAATAACGTATGCTGTAATATATCCACTACAAAAGGAAATATATCTTCATATCTTCAACTTCAAATTTAATATATACTATTAATTAGTGTTTATTTACACTAAAAATGtaaactaacctatattcaaacctttttagcttgtttttttttattatatttatttttttaatatggcaACATCCACCATGTATCCAAATGGATCTGTTTTTCCTTTAGTGTTGACGTTGCAGTCTTTGGAGCTGCCTCAGATGAGCATTTATCCTGCATTCATATTTGGATTAacaacatacttgtttatcttgtTCTGCAATTTAACAATTGTCATCACCATTTGTTTAAACAGAAGTCTCCATAAACCGATGTACATACTGCTGCTCAACATGCCCATCAATGACACAATGGCTGCCACAAACTTTTTTTCCCAGCTGCTGTACAGCATCTGGTCTCAGGACACTTCGATATCCTATCCTGCCTGTTTGCTTCAAGGATTTATTGTACACTTATATGGTGGTGCGTCTTATGTTATTCTTACCGCTATGGCCTATGACAGATATATCGCAATCTGCTGCCCACTAAGATATGGAGCTATTATGAACAGCAATAACTTGATAAAAATCATAACTGGGATGTGGGTTTTTAATTTCACTGTCATAACTGTACTTTTCTCTCTTCTTCTGCCTTACAAGATTTGCAGGACTCACATGACAGATCTTTTCTGCTATAATCCATCAATAATGAAACTCATGTGTGAAGACACGACAGTAAACAATATCATTGGATTGATCAGTCTAGTTTTGTACCACTGCATTGCTCTCTCTGTTGTGGctttcacatatattcatattttaatcacTTGTGTCACTAATAAGCAGTCAGACGCAAAGATGAAGGCTCTTCAGACATGTGGGACTCATTTGGTCGTCTTTTTGTTCTTGGAGTTTAACACTCTTTTTCCACTCGTTGCACATCGCTCTGAAAGTGTTCCAGCTTATCTTCGTAGAGTGTTTTCTATAACAGTTTTTGTCTTTCCTCCTATTATAAATCCTCTTGTTTATGGGTTTAAAACTAAAGAGATCAGGCAGAAAATGCTGACCTGTTTCAAGAGGAAGATGACCAGCCTCTGAATATTTTTCCTTCCTTGTTTACAAATGATCCTCCATTTTATTGTGCGTTGTGGTTTCAAATCTCACTAAACTGCAGCTAATTCATGAACTAATTTAATCTAAATTCCTAATGTGTATTTTTCGTCTTGTATTGTTATGcaatatgttttgttgttttacttttaatatcACAGAgaatcttttaattttttaactacATTTATTTGTCTGTAATGATAATTCTGTGTTTGTCAGAATGAAAGAAACTAAACAATAATGTTCTAATGAGCTTCATTTATCCTAAAGTGCAACTTTTATGCTGTTTTAAAGgttgttcattttgttttggaGTTCTATTAAAAAAATGGTACCAGGGAAAACTAAAAAAGGTTTTCACGGTGATGCCATTGAAGGATCATTGTGAGAACATTTTTAATTCTGGGCAATGTTTGAGGGTGAAACTGAGAATGTGGTGAAGACCAAAGGCTGTCATACCTTACATTTGTTGTTGATCTACATTAATCACCTACAAAAGTAAAACAGgaatttctgcagaattattgaTGCAGTTAGCAAACCATATTTTAGGAGAATGTAACTGTCTCCCAGatatggattgcggctggaagggcgctgcgtaaaaacgtgctggataagttggcggttcattccgctgtggcgacccttgattattaccgaaaagaaaatgaatgaaggaatgaatgttaCTGTCTGTaactttgctctctctctctctttactgACAGTGTTTCTGTTTTTTTCAGCTTTCCAATCTGTTTTCTCCAATTTGCTGGGTAGTTTCAGACAGCTGATTGTCCTTGCAAATCAGTAATCccaagctgtggtcacactagagtttgagcttgcgaaattctgtcgtacggtgctgcgaacagaggcgggattaaacaagatgattagacattaaaaaaaagtgtgcgattggtccatgttttaaatttctgtccagagaggccATGTTTTGTTCCTCgactggtctcacgcagtcaagtgatgcggtTTTgttggtcagagttcaccaagcttgaactttgcaatgcagcgaactgtgaaacttgtcgcacgagctggtctgacgcattcgcgtttGTATGAATGGATGTCTGTGGGGagaaaagtctagtgtgaccacagcttgaCTCATTTACTGCCACCTGCCTTTCATTTCTTCTGATTGCTGGTCCTATATGTGAGAAGGTTTCACTTCTCTACTTGCTTTCTTCCTGGAGAACTGACCCTCTGCTTTGCCGTTGCCTTATCCTGTACTACCACTCCTGGACCAAATACTTGCTTCATTTTGATTTTCATTTATGCCACTCCTGAATTTCCTTTTCATgttaatttgctgttaattttttGTTGGAATGTATCCTATGTTCTGGCACGTGGTCTGTGGTCCATTcctcagtttattttttattaaatccatGACCTGCCCTGGATCTAAGCAAGCTGCTGAGTCTTTCTTTtgcttatttaattaaaaacttatttaattaaACTCCTCTGCTTTTGGGTCCTTTATACAGACACTCGTGACAGAAACTTTATACATTTATCTACTTTATCTTTGACACTCTGCAGACCTTTTGTACAAACTTTTATGGTTGTATTCAGACAACATCATAAGACTGTAATATTAGATTAGATGTAGgttgccagcgtctaaggacaatgttagaCATCGTATGGATAACATCCACAcagcatcaagctgtaacattattagaagTTGAtatattttttggcttttatgttgcattggaaagtaaccaaaatgcaacgtccttTGACGTTGGACACTGACATCAATCTGgcgtcaacccgatttttatgTCCAAACATAATGCAGCATCCCATGATATTGggatacaacgtcaatctgacatgtTGACAATCTTTGGCTGCTTGGTTGTCTCAACATGTTTAAATGTGTACAAATTAAGCATGCTTCTGTAAAACTGATAAAACAcgtttaatatttcattattgTTATTGCACACtatccttttttaaaatgtatgcatttgtACCAAAATGGTTTAAatgtaccttaaaagtacaaaattatTATCTAAGGTGAACATACTACAACCTAAAAGTACAAAGTAGgccttttaaaagttttattgtttcTGAGAGTTTACTCTAGACTTTACACTATTTTTCACCAGTAGGAGTTTTCAGTTTCTGTACATTTAGGTTTATGCATCCCTATGTAAACCCTTCATTTCTACTCCTCCAAAAAATTGGCGAAAAGTTAGTAACAGGTGGCCTTTACTCAGTTGTATCTATGTGTTTTATATGAAATCTTAAGCACTAACCAAAagcacacatatttaaataattaacacctaaatatgcattaatatgattaaaaaaCGACCTGATAATCCAAAATTTTGGAAAAATTtaaattgaacattttttttttttttgactcatgTCCTATTCATCACACACTGTAGATAAGGCAGGGTTTATGACCTACGAAGCATCCAGCCACCAGGAAGCCATCAAAACGTTTGGACGTGATGGACACTTTCTTTCACTCCCTGTGTCACTATTTCTATTCACATGCATGCGTGTCCAGTATATTTGATGTACCATGAACTCAGAAAATAAAGAGAAT

Function


GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-81 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to several human genes including OR1B1 (olfactory receptor family 1 subfamily B member 1); OR1D2 (olfactory receptor family 1 subfamily D member 2); and OR1F1 (olfactory receptor family 1 subfamily F member 1).

Ensembl:

ensembl_id ENSDARG00000054718

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00018374 True 3916 mRNA 0.35 1 31320017 31323932

Neighbor


gene id symbol gene type direction distance location
XLOC_009345 or118-3 coding downstream 741 31317358 ~ 31319276 (-)
XLOC_009344 AL928851.1 coding downstream 4469 31315209 ~ 31315548 (-)
XLOC_009343 or118-1 coding downstream 6085 31311716 ~ 31313932 (-)
XLOC_009342 AL928851.2 coding downstream 20339 31299563 ~ 31299678 (-)
XLOC_009341 zgc:171927 coding downstream 32047 31282220 ~ 31287970 (-)
XLOC_009347 or111-2 coding upstream 7424 31331356 ~ 31366742 (-)
XLOC_009348 AL845428.2 coding upstream 37855 31361787 ~ 31362141 (-)
XLOC_009349 or111-4 coding upstream 47258 31371190 ~ 31372486 (-)
XLOC_009350 or111-5 coding upstream 58083 31382015 ~ 31383588 (-)
XLOC_009351 or111-6 coding upstream 65471 31389403 ~ 31390985 (-)
XLOC_009333 AL928870.1 non-coding downstream 307305 31005981 ~ 31012712 (-)
XLOC_009331 NA non-coding downstream 395928 30923150 ~ 30924089 (-)
XLOC_009330 NA non-coding downstream 404756 30911402 ~ 30915261 (-)
XLOC_009360 AL929092.1 non-coding upstream 223802 31547734 ~ 31547852 (-)
XLOC_009362 CR388091.1 non-coding upstream 739360 32063292 ~ 32063409 (-)
XLOC_009364 NA non-coding upstream 1089382 32413314 ~ 32433673 (-)
XLOC_009366 CR855389.2 non-coding upstream 1309358 32633290 ~ 32635777 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000093_01421955_01422896 OR118-3, OR118-2, OR118-1 coding CI01000093 null 1421934 ~ 1423339 (-)