Gene
RNA
| Item | Value |
|---|---|
| gene id | G193338 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000043 |
| NCBI id | null |
| chromosome length | 7746009 |
| location | 6297234 ~ 6299236 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU219491 | True | 2003 | lncRNA | 0.38 | 1 | 6297234 | 6299236 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000043_06289433_06294679 | NA | coding | upstream | 2471 | 6289433 ~ 6294763 (+) |
| CI01000043_06245379_06253979 | DHODH | coding | upstream | 43203 | 6245379 ~ 6254031 (+) |
| CI01000043_06059507_06177601 | SBF2 | coding | upstream | 118827 | 6059507 ~ 6178407 (+) |
| CI01000043_06019385_06042165 | NA | coding | upstream | 254874 | 6018867 ~ 6042360 (+) |
| CI01000043_06011888_06012172 | NA | coding | upstream | 284941 | 6011064 ~ 6012293 (+) |
| CI01000043_06311971_06320679 | DPEP1 | coding | downstream | 12270 | 6311506 ~ 6320757 (+) |
| CI01000043_06336595_06341481 | KCNG4B | coding | downstream | 35435 | 6334671 ~ 6341559 (+) |
| CI01000043_06350003_06351456 | NA | coding | downstream | 49614 | 6348850 ~ 6351792 (+) |
| CI01000043_06368621_06375360 | NQO2, NQO1 | coding | downstream | 69385 | 6368621 ~ 6375522 (+) |
| CI01000043_06379017_06386958 | KIAA0895L | coding | downstream | 79781 | 6379017 ~ 6388362 (+) |
| G193128 | NA | non-coding | upstream | 83512 | 6213495 ~ 6213722 (+) |
| G193083 | NA | non-coding | upstream | 176307 | 6116564 ~ 6120927 (+) |
| G193086 | NA | non-coding | upstream | 182052 | 6113060 ~ 6115182 (+) |
| G193071 | NA | non-coding | upstream | 280229 | 6003400 ~ 6017005 (+) |
| G193100 | NA | non-coding | upstream | 375197 | 5921765 ~ 5922037 (+) |
| G193350 | NA | non-coding | downstream | 26125 | 6325361 ~ 6325576 (+) |
| G193355 | NA | non-coding | downstream | 43408 | 6342644 ~ 6342933 (+) |
| G193356 | NA | non-coding | downstream | 43920 | 6343156 ~ 6343381 (+) |
| G193362 | NA | non-coding | downstream | 49391 | 6348627 ~ 6348838 (+) |
| G193330 | NA | non-coding | downstream | 90979 | 6390215 ~ 6390911 (+) |
| G193125 | NA | other | upstream | 86341 | 6205688 ~ 6210893 (+) |
| G192489 | NA | other | upstream | 744610 | 5467317 ~ 5552624 (+) |
| CI01000043_05169578_05171795 | CLEC3A | other | upstream | 1125504 | 5169578 ~ 5171848 (+) |
| CI01000043_05114193_05114497 | BOLA3 | other | upstream | 1178786 | 5114193 ~ 5114497 (+) |
| G192454 | NA | other | upstream | 1303878 | 4993013 ~ 4993356 (+) |
| G193344 | NA | other | downstream | 10916 | 6310152 ~ 6310538 (+) |
| G193422 | NA | other | downstream | 344905 | 6644141 ~ 6648342 (+) |
| G193584 | NA | other | downstream | 632740 | 6931976 ~ 6934847 (+) |
| G193636 | NA | other | downstream | 1192701 | 7491937 ~ 7597959 (+) |
| G193650 | NA | other | downstream | 1216288 | 7544525 ~ 7544607 (+) |
