Gene
RNA
| Item | Value |
|---|---|
| gene id | G193823 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000043 |
| NCBI id | null |
| chromosome length | 7746009 |
| location | 6311793 ~ 6322621 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU220071 | True | 7532 | lncRNA | 0.38 | 3 | 6311793 | 6322621 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000043_06302312_06306588 | NA | coding | downstream | 5162 | 6302090 ~ 6306631 (-) |
| CI01000043_06269503_06272443 | NA | coding | downstream | 39350 | 6269380 ~ 6272443 (-) |
| CI01000043_06225443_06244661 | NA | coding | downstream | 67132 | 6224972 ~ 6244661 (-) |
| CI01000043_06218733_06222025 | NA | coding | downstream | 89025 | 6218733 ~ 6222768 (-) |
| CI01000043_06204424_06208220 | NA | coding | downstream | 103573 | 6204403 ~ 6208220 (-) |
| CI01000043_06393054_06405683 | CSK22, CSNK2A2B, CSNK2A2.L, CSNK2A2, CSNK2A2A | coding | upstream | 70103 | 6392724 ~ 6405683 (-) |
| CI01000043_06408340_06410360 | ZNF319 | coding | upstream | 85464 | 6408085 ~ 6412619 (-) |
| CI01000043_06418312_06429795 | JPH3 | coding | upstream | 95469 | 6418090 ~ 6430039 (-) |
| CI01000043_06454177_06466545 | DRD4B | coding | upstream | 130833 | 6453454 ~ 6466698 (-) |
| CI01000043_06496689_06498999 | RXFP3.3A2 | coding | upstream | 173989 | 6496610 ~ 6499071 (-) |
| G193806 | NA | non-coding | downstream | 12468 | 6297232 ~ 6299325 (-) |
| G193805 | NA | non-coding | downstream | 17012 | 6291288 ~ 6294781 (-) |
| G193804 | NA | non-coding | downstream | 24080 | 6287473 ~ 6287713 (-) |
| G193799 | NA | non-coding | downstream | 32553 | 6278967 ~ 6279240 (-) |
| G193790 | NA | non-coding | downstream | 43202 | 6268263 ~ 6268591 (-) |
| G193841 | NA | non-coding | upstream | 2186 | 6324807 ~ 6325236 (-) |
| G193842 | NA | non-coding | upstream | 2740 | 6325361 ~ 6325599 (-) |
| G193843 | NA | non-coding | upstream | 3162 | 6325783 ~ 6327302 (-) |
| G193849 | NA | non-coding | upstream | 20539 | 6343160 ~ 6343436 (-) |
| G193854 | NA | non-coding | upstream | 24684 | 6347305 ~ 6347575 (-) |
| G193313 | NA | other | downstream | 55514 | 6255572 ~ 6256279 (-) |
| G192947 | NA | other | downstream | 693353 | 5593681 ~ 5618440 (-) |
| G192980 | NA | other | downstream | 853379 | 5456497 ~ 5458414 (-) |
| G192109 | NA | other | downstream | 1979067 | 4331911 ~ 4332726 (-) |
| G191296 | NA | other | downstream | 3261929 | 3048372 ~ 3049864 (-) |
| G193922 | NA | other | upstream | 240719 | 6563340 ~ 6566039 (-) |
| G194100 | NA | other | upstream | 1108265 | 7494997 ~ 7498973 (-) |
