Gene
RNA
| Item | Value |
|---|---|
| gene id | G193843 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000043 |
| NCBI id | null |
| chromosome length | 7746009 |
| location | 6325783 ~ 6327302 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU220092 | True | 242 | lncRNA | 0.29 | 3 | 6325783 | 6327302 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000043_06302312_06306588 | NA | coding | downstream | 19152 | 6302090 ~ 6306631 (-) |
| CI01000043_06269503_06272443 | NA | coding | downstream | 53340 | 6269380 ~ 6272443 (-) |
| CI01000043_06225443_06244661 | NA | coding | downstream | 81122 | 6224972 ~ 6244661 (-) |
| CI01000043_06218733_06222025 | NA | coding | downstream | 103015 | 6218733 ~ 6222768 (-) |
| CI01000043_06204424_06208220 | NA | coding | downstream | 117563 | 6204403 ~ 6208220 (-) |
| CI01000043_06393054_06405683 | CSK22, CSNK2A2B, CSNK2A2.L, CSNK2A2, CSNK2A2A | coding | upstream | 65422 | 6392724 ~ 6405683 (-) |
| CI01000043_06408340_06410360 | ZNF319 | coding | upstream | 80783 | 6408085 ~ 6412619 (-) |
| CI01000043_06418312_06429795 | JPH3 | coding | upstream | 90788 | 6418090 ~ 6430039 (-) |
| CI01000043_06454177_06466545 | DRD4B | coding | upstream | 126152 | 6453454 ~ 6466698 (-) |
| CI01000043_06496689_06498999 | RXFP3.3A2 | coding | upstream | 169308 | 6496610 ~ 6499071 (-) |
| G193842 | NA | non-coding | downstream | 184 | 6325361 ~ 6325599 (-) |
| G193841 | NA | non-coding | downstream | 547 | 6324807 ~ 6325236 (-) |
| G193823 | NA | non-coding | downstream | 3162 | 6311793 ~ 6322621 (-) |
| G193806 | NA | non-coding | downstream | 26458 | 6297232 ~ 6299325 (-) |
| G193805 | NA | non-coding | downstream | 31002 | 6291288 ~ 6294781 (-) |
| G193849 | NA | non-coding | upstream | 15858 | 6343160 ~ 6343436 (-) |
| G193854 | NA | non-coding | upstream | 20003 | 6347305 ~ 6347575 (-) |
| G193855 | NA | non-coding | upstream | 20346 | 6347648 ~ 6347904 (-) |
| G193857 | NA | non-coding | upstream | 21332 | 6348634 ~ 6348919 (-) |
| G193858 | NA | non-coding | upstream | 21742 | 6349044 ~ 6349298 (-) |
| G193313 | NA | other | downstream | 69504 | 6255572 ~ 6256279 (-) |
| G192947 | NA | other | downstream | 707343 | 5593681 ~ 5618440 (-) |
| G192980 | NA | other | downstream | 867369 | 5456497 ~ 5458414 (-) |
| G192109 | NA | other | downstream | 1993057 | 4331911 ~ 4332726 (-) |
| G191296 | NA | other | downstream | 3275919 | 3048372 ~ 3049864 (-) |
| G193922 | NA | other | upstream | 236038 | 6563340 ~ 6566039 (-) |
| G194100 | NA | other | upstream | 1103584 | 7494997 ~ 7498973 (-) |
