Gene
RNA
| Item | Value |
|---|---|
| gene id | G193858 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000043 |
| NCBI id | null |
| chromosome length | 7746009 |
| location | 6349044 ~ 6349298 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU220108 | True | 255 | lncRNA | 0.43 | 1 | 6349044 | 6349298 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000043_06302312_06306588 | NA | coding | downstream | 42413 | 6302090 ~ 6306631 (-) |
| CI01000043_06269503_06272443 | NA | coding | downstream | 76601 | 6269380 ~ 6272443 (-) |
| CI01000043_06225443_06244661 | NA | coding | downstream | 104383 | 6224972 ~ 6244661 (-) |
| CI01000043_06218733_06222025 | NA | coding | downstream | 126276 | 6218733 ~ 6222768 (-) |
| CI01000043_06204424_06208220 | NA | coding | downstream | 140824 | 6204403 ~ 6208220 (-) |
| CI01000043_06393054_06405683 | CSK22, CSNK2A2B, CSNK2A2.L, CSNK2A2, CSNK2A2A | coding | upstream | 43426 | 6392724 ~ 6405683 (-) |
| CI01000043_06408340_06410360 | ZNF319 | coding | upstream | 58787 | 6408085 ~ 6412619 (-) |
| CI01000043_06418312_06429795 | JPH3 | coding | upstream | 68792 | 6418090 ~ 6430039 (-) |
| CI01000043_06454177_06466545 | DRD4B | coding | upstream | 104156 | 6453454 ~ 6466698 (-) |
| CI01000043_06496689_06498999 | RXFP3.3A2 | coding | upstream | 147312 | 6496610 ~ 6499071 (-) |
| G193857 | NA | non-coding | downstream | 125 | 6348634 ~ 6348919 (-) |
| G193855 | NA | non-coding | downstream | 1140 | 6347648 ~ 6347904 (-) |
| G193854 | NA | non-coding | downstream | 1469 | 6347305 ~ 6347575 (-) |
| G193849 | NA | non-coding | downstream | 5608 | 6343160 ~ 6343436 (-) |
| G193843 | NA | non-coding | downstream | 21742 | 6325783 ~ 6327302 (-) |
| G193859 | NA | non-coding | upstream | 196 | 6349494 ~ 6349693 (-) |
| G193861 | NA | non-coding | upstream | 1016 | 6350314 ~ 6351742 (-) |
| G193862 | NA | non-coding | upstream | 2478 | 6351776 ~ 6352021 (-) |
| G193863 | NA | non-coding | upstream | 2819 | 6352117 ~ 6352356 (-) |
| G193895 | NA | non-coding | upstream | 144095 | 6493393 ~ 6493635 (-) |
| G193313 | NA | other | downstream | 92765 | 6255572 ~ 6256279 (-) |
| G192947 | NA | other | downstream | 730604 | 5593681 ~ 5618440 (-) |
| G192980 | NA | other | downstream | 890630 | 5456497 ~ 5458414 (-) |
| G192109 | NA | other | downstream | 2016318 | 4331911 ~ 4332726 (-) |
| G191296 | NA | other | downstream | 3299180 | 3048372 ~ 3049864 (-) |
| G193922 | NA | other | upstream | 214042 | 6563340 ~ 6566039 (-) |
| G194100 | NA | other | upstream | 1081588 | 7494997 ~ 7498973 (-) |
