XLOC_009349 (or111-4)


Basic Information

Item Value
gene id XLOC_009349
gene name or111-4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31371190 ~ 31372486 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018380
GCAGTCTTTGTGATGAGAGAATAAGGACTGGGATTTCCAGCAAAAAAACACCCTTTCATTCAAAGAAGCTCACAAGTATTTAGACAGATGCTGTCATTGTTTGCTCAAACTAAATCCTTGCACAAAACACTGGGGAAAAGTTGCTATGAATTCTGTAAATGCAAGTTTTTACCAGAATATCTCTATTATTCGTCCTGAATACTTTTTCATCAGTGGACTTTCAGGTATACCATTCAGCaattattactatatatttttatttgtgatttattttatatctgtAATTGGGAATTCTGTAGTCCTTCTCATTATAGCTGTTGACCGGAGTCTGCACAGTCCAAAATACATTGGTGTGTTTAACTTGGCCTTGGCTGATATTGGTGAAACTAATGCACTGATTCCTAACATGATGAAGACTTTTCTGTTTGACTCACAGTACATCTCCTATAACGCTTGTTTGGCAAATATGTTTTTTGTGTTCCTCTTTAGTTCTGTACAAAGTTTCACTCTTGTTGCTTTGGCGTATGATCGCTTCATTGCAATTTGTTTGCCATTAAGATATCATGCTATTGTCACTAATACTAGTATGATTTTAATTTTCTCTACAATATGGGTATTTAATTCTTCTGTGGTAGCCTCTATGGTGTCTATGATACCTCGACTTTCATTCTGTGATTCCAACAAAATACCAAGTTATTTTTGTGACCATGGACCATTATTTAGGTTGGCTTGTAATGACGCCAGGTTTAGTGAGTTTTTTGCTTATTTCATCAGTGCTTTGTACATTACCATGCCACTGGTCATTATTGTCCTTTCATATCTACACATTTTTGTTGCTTTGATCAAGATTACAACTTGGGAAGGACGGTTAAAAGCATTGAAGACCTGTGTGTCTCACCTGTTGTTAGTAGGAATATTTTTCCTACCGATATACTGCACATACATTGCACAAGTTTTAATTCCTCTTACAACTAATGCCAGAATCATTGGCACATCTCTGTCGTATGCCGTTCCACCTTTGTTAAATCCTATTATTTATGTCTTTAACACAGCTGAAATCAAAGACATACTTCGAAAAGTGTGCAAAAAGAGATTGACACCGGTTGGTGGGAATATTTCCAAATGAAtgtttgttttatcattaatTATATGAAGATTGCATGCTGGGGT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010308-16 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000088846

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018380 True 1170 mRNA 0.36 2 31371190 31372486

Neighbor

gene id symbol gene type direction distance location
XLOC_009347 or111-2 coding downstream 4448 31331356 ~ 31366742 (-)
XLOC_009348 AL845428.2 coding downstream 9049 31361787 ~ 31362141 (-)
XLOC_009346 or118-2 coding downstream 47258 31320017 ~ 31323932 (-)
XLOC_009345 or118-3 coding downstream 51914 31317358 ~ 31319276 (-)
XLOC_009344 AL928851.1 coding downstream 55642 31315209 ~ 31315548 (-)
XLOC_009350 or111-5 coding upstream 9529 31382015 ~ 31383588 (-)
XLOC_009351 or111-6 coding upstream 16917 31389403 ~ 31390985 (-)
XLOC_009352 or111-7 coding upstream 27437 31399923 ~ 31401361 (-)
XLOC_009353 or111-8 coding upstream 32320 31404806 ~ 31406093 (-)
XLOC_009354 or111-9 coding upstream 35354 31407840 ~ 31409013 (-)
XLOC_009342 AL928851.2 non-coding downstream 71512 31299563 ~ 31299678 (-)
XLOC_009333 AL928870.1 non-coding downstream 358478 31005981 ~ 31012712 (-)
XLOC_009331 NA non-coding downstream 447101 30923150 ~ 30924089 (-)
XLOC_009360 AL929092.1 non-coding upstream 175248 31547734 ~ 31547852 (-)
XLOC_009362 CR388091.1 non-coding upstream 690806 32063292 ~ 32063409 (-)
XLOC_009364 NA non-coding upstream 1040828 32413314 ~ 32433673 (-)
XLOC_009366 CR855389.2 non-coding upstream 1260804 32633290 ~ 32635777 (-)
XLOC_009367 NA non-coding upstream 1441250 32813736 ~ 32817995 (-)

Expression


Co-expression Network