G194100


Basic Information

Item Value
gene id G194100
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 7494997 ~ 7498973 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU220401
TGTGTGTGTGTGTGTGTCTATCCGATGGTTACACAGTTATTGTTTCCTCTGAATATTGCCGTTATCGTCTGTGATAAATCGCTTATACTCTAACGAAGTTTTATTATATTTGGCTATCTGTTTTGGAAATTGCAAGTCAGTTCTATATAACAAAAATATATTTTTAGAATAGATGTACTAAATAAATCACTGATTAAACATTAACTGATAGCCAAATGTATTCAAATGAACAACAACAGATGCAAATTAGAAGGTTTAATGTTCATAACAATATGAAGCAATTACTTTATAAGAAAAGTATATAAAGATTAAACTTATTAAAAGAGTGAAAAAGTTAAGATGTGATTTTGAATCTTGTAATAAATCAATAGAAAACATTCTTAAATGTTTGAAAAACAGTACATTTATGATGATCTTGTGAGATTAGTACTAAAAAGTTTTTAATATATGAAAACAAATTACTTGTGAAAACAGTACAACAGCAATTTAAAATATATAATAAACCATCTGGCTGTACATTATCCTTTATATAACAGTGATTACAGCATTATTAAGATAATGTACATATAACAAGTGTTAAATACTAATGTTCAGCAAATATATGGGGGGGGGGGGTTTAATTATGAATAAACAATTAATGAACTCTAAAGGTGTATATAAGGCCCTGTTTACACATTTAACCATGTTTACTTCTTCACAGCAGAAGTGTGGAACAGGCTGAATCATTGCAGCCAGAATGTATGCCCAAATCCTCCAAATCAATTACCAGGGTTCCAGTGCCAGTAGCTGGAGGATTTCCTGCACACAAGCACAAACATTAGAAAAAGGCTATGCTAGCAAGTAGTCTTCTATTAAAAAGAAACACAAATTACCATCATCCACGGACAAAATGATAGCTGTGTATTTGCCATCTTTCACATGGGGAGATTCTCTATCCGTAAGCGTCTTGACTTTAATCGTTACAGTGTCTTGATGTACACTCAGCCAGCCGGCAGGATCACTGCCAATTTTACGTTATCTTCTGTGATTTTGCATTATCATTGCTGTCAGTCACAGTAATAACAGCTGTGCCACTGGTTGAAAAACCTCTTCCTTCCATATCAGCAGCGACAACTGTCAAAGTGTATTTGGACCATTTCTAAAAAGGAAGATGTTTTCAGGTGAGTTTGTTTATATTAAATCATTCTTCATCACTGCAAGATCCATTCATCAGATTTCTCACCTCTTTGTCCAAGCCTAAAGAATTCACACGAATTCCTCCAGTAACAGAGTTGATTTCAAACATGTTTGGATTTGGCAATTCTGTTACTGGAGGAATTCGTGTGAATTCTGTAGGCTTGGACAAAGAGAAATGGTCCAAATACACTTTGACAGTTGTGGCTACTGACATGGAAGGAAGAGGTTATTCAACCACTGGCACAGCTGTTATTACTGTGACTGACAGCAATGATAACGCACCTCAGTTTGAGCAAACCTCGCAAACTGTATCTGTTCCAGAGAATAAAGTAGGGGCTGTAGTGGCCAAACTTACAGTTACTGATGAAGATGAA
>TU220403
TGTGATTTTGAATCTTGTAATAAATCAATAGAAAACATTCTTAAATGTTTGAAAAACAGTACATTTATGATGATCTTGTGAGATTAGTACTAAAAAGTTTTTAATATATGAAAACAAATTACTTGTGAAAACAGTACAACAGCAATTTAAAATATATAATAAACCATCTGGCTGTACATTATCCTTTATATAACAGTGATTACAGCATTATTAAGATAATGTACATATAACAAGTGTTAAATACTAATGTTCAGCAAATATATGGGGGGGGGGGGTTTAATTATGAATAAACAATTAATGAACTCTAAAGGTGTATATAAGGCCCTGTTTACACATTTAACCATGTTTACTTCTTCACAGCAGAAGTGTGGAACAGGCTGAATCATTGCAGCCAGAATGTATGCCCAAATCCTCCAAATCAATTACCAGGGTTCCAGTGCCAGTAGCTGGAGGATTTCCATCATCCACGGACAAAATGATAGCTGTGTATTTGCCATCTTTCACATGGGGAGATTCTCTATCCGTAAGCGTCTTGACTTTAATCGTTACAGTGTCTTGATGTACACTCAGCCAGCCGGCAGGATCACTGCCAATTTTATACGTTATCTTCTGTGATTTTGCATTATCATTGCTGTCAGTCACAGTAATAACAGCTGTGCCACTGGTTGAAAAACCTCTTCCTTCCATATCAGCAGCGACAACTGTCAAAGTGTATTTGGACCATTTCTCTTTGTCCAAGCCTAAAGAATTCACACGAATTCCTCCAGTAACAGAGTTGATTTCAAACATGTTTGGATTTGGCAATTCTGGATCTTGCTTGACAATTGAGTATCTGATCACAGCATTGTCAGTATCTGGATCATCTGCATCAGTGGCTGTGACTGTCATAAACTCATGACCTATTTCAGCAGCTTCAGAAACATTTCCATTAAATGGATTTTGAGTAAAAACAGGATAATCATCATTTTGGTCCAGCACATTTACGATAATTTCCATTGGCTTTTCTGCTACATCCACATCAACTCCAGTAGCATGAGCTATAAGTCTGTATGAAGCTTTTCTTTCTCTGTCGAGTGGTCGAGTCACAAACAGATTCCCTGATAATCTTTCTATAGTGAAAGTCCCCTTAGGGTCCAGATCTGCTCCTTCACCTGTGATCTTGTATTGCATCTGAGCTTCACTAGACATGTCTGACTTTATCTGGACCAGCTTCATTGGGAAAGGACCTCTGCTATTCTCAAGAACACGGAACGGAGGAATAACCCAACCTCTCTTTGCTCTCTTTAGACCCGTCGAAGACTTTGGAAACATCAGAATCAGATCATCAGAGTGAGACTCCATCTGTGGAGAGGAGATGTTCATGACCGTGTCCATGTGATGGTCCTCATGATGGTGGACACGCTCAACTCTGACAGACACCGTGTGCTTCTTGCCACTGGAGTCCCAAGCGTGCACAGAAAACACCTTGTGACCTTCATGAAGAGTCACTTGTCTCTTCAGCGTTACAGTCCCATCCGTGTCCACATCAAACCACTTGTCAGAGGACTGAAAGAGCATTCTTGTTCTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU220401 True 1305 lncRNA 0.35 2 7496788 7498973
TU220403 False 1567 lncRNA 0.40 8 7494997 7498633

Neighbor

gene id symbol gene type direction distance location
CI01000043_07418072_07421953 NA coding downstream 4576 7417406 ~ 7423890 (-)
CI01000043_07363226_07372771 CTU2 coding downstream 55695 7363226 ~ 7372771 (-)
CI01000043_07251626_07257659 CDT1 coding downstream 169865 7250942 ~ 7258601 (-)
CI01000043_07200195_07201430 TRAPPC2L coding downstream 227036 7200119 ~ 7201430 (-)
CI01000043_06979174_07034928 ACSF3 coding downstream 392893 6979112 ~ 7035573 (-)
CI01000043_07642034_07648935 NA coding upstream 142852 7641825 ~ 7649353 (-)
CI01000043_07697097_07700330 NA coding upstream 197623 7696596 ~ 7701211 (-)
G193907 NA non-coding downstream 885627 6540013 ~ 6542839 (-)
G193895 NA non-coding downstream 934831 6493393 ~ 6493635 (-)
G193863 NA non-coding downstream 1076110 6352117 ~ 6352356 (-)
G193862 NA non-coding downstream 1076445 6351776 ~ 6352021 (-)
G193861 NA non-coding downstream 1076724 6350314 ~ 6351742 (-)
G194120 NA non-coding upstream 14890 7513863 ~ 7560313 (-)
G194109 NA non-coding upstream 32819 7531792 ~ 7730635 (-)
G194111 NA non-coding upstream 59002 7557975 ~ 7560676 (-)
G194183 NA non-coding upstream 59514 7558487 ~ 7561540 (-)
G194209 NA non-coding upstream 166423 7665396 ~ 7696469 (-)
G193922 NA other downstream 862427 6563340 ~ 6566039 (-)
G193313 NA other downstream 1172187 6255572 ~ 6256279 (-)
G192947 NA other downstream 1810026 5593681 ~ 5618440 (-)
G192980 NA other downstream 1970052 5456497 ~ 5458414 (-)
G192109 NA other downstream 3095740 4331911 ~ 4332726 (-)
G194116 NA non-coding upstream 13203 7491945 ~ 7724924 (-)

Expression


Co-expression Network