Gene
RNA
| Item | Value |
|---|---|
| gene id | G194109 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000043 |
| NCBI id | null |
| chromosome length | 7746009 |
| location | 7531792 ~ 7730635 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU220412 | True | 252 | lncRNA | 0.49 | 2 | 7531792 | 7730635 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000043_07464177_07486461 | NA | coding | downstream | 44648 | 7463755 ~ 7487144 (-) |
| CI01000043_07424769_07438909 | NA | coding | downstream | 92872 | 7424769 ~ 7438920 (-) |
| CI01000043_07418072_07421953 | NA | coding | downstream | 107902 | 7417406 ~ 7423890 (-) |
| CI01000043_07363226_07372771 | CTU2 | coding | downstream | 159021 | 7363226 ~ 7372771 (-) |
| CI01000043_07251626_07257659 | CDT1 | coding | downstream | 273191 | 7250942 ~ 7258601 (-) |
| G194100 | NA | non-coding | downstream | 32819 | 7494997 ~ 7498973 (-) |
| G193907 | NA | non-coding | downstream | 988953 | 6540013 ~ 6542839 (-) |
| G193895 | NA | non-coding | downstream | 1038157 | 6493393 ~ 6493635 (-) |
| G193863 | NA | non-coding | downstream | 1179436 | 6352117 ~ 6352356 (-) |
| G193862 | NA | non-coding | downstream | 1179771 | 6351776 ~ 6352021 (-) |
| G193922 | NA | other | downstream | 965753 | 6563340 ~ 6566039 (-) |
| G193313 | NA | other | downstream | 1275513 | 6255572 ~ 6256279 (-) |
| G192947 | NA | other | downstream | 1913352 | 5593681 ~ 5618440 (-) |
| G192980 | NA | other | downstream | 2073378 | 5456497 ~ 5458414 (-) |
