XLOC_009351 (or111-6)


Basic Information

Item Value
gene id XLOC_009351
gene name or111-6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31389403 ~ 31390985 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018382
AGTGATCTTTCCAGCATGAGAGAAGAAGGACATGGACTGAGCTGAGTGGTTCAGACAGCTCACTGGTGTTCAGACTTTTATAGTTTGCTCGGACTTGACAATTCTTTATATTTACAGCTTGAACAGAACACCAACCGCAAAGACTGCCatgaattttttaaatgaaagtttttACCAGAATATCTCTTTTGTTCATCCTCAGTACTTTTACATTATTGGACTTTCCGGTACACCTTACAGCAGTTATTTCTACGTTTTCTTATTTATCACATATTTCATTACTTTATTTGGGAACTCTGTAGTTCTTCTCATTATAGCTCTTGAGCGGAGTCTGCACAGTCCAAAGTACATTGGTGTGTTTAACTTGGCCTTGGCTGATATTGGTGAAACTAATGCTCTGATTCCTAACATGGTGAAGACTTTTCTGTTTGACTCACAGTACATCTCTTATAATGCTTGCTTGGCAAACATGTTTTTTGTGTTCCTCTTTAGCTCCATACAAAGCTTTGCTCTTCTTGTTCTTGCCTTTGATCGCTTTGTTGCGATTTGTTTGCCATTAAGATATCATGCTCTTGTGAATAATACCACTATGCTTTTAGCTTTCGCTGCAGTTTGGGCATTTAACTCCTTTGTGGTGGCCTTGATGGTGTCTTTGATCACCCGACTTTCCTTCTGTCAGTCTAATATGATACAGAGTTATTTTTGTGATCACGGACCAGTGTATAGGATAGCATGTAATGACTTTAGTATAAATAAGTTTATGGCTTTTCTCATAACTGGTTTATATCTTGTAATCCCACTCTTTCTTATAGTCCTGTCATATCTTGGCATTTTTCTTGCTTTAACCAAAATTACGACTTTTGAAGGACGTATAAAGGCATTGAAGACCTGTGTTTCTCATCTGTTGTTAGTAGGAACATTATTCCTCCCTCTATTTTGCACATACTTTGCACAGCTTTTACTTTCTCTCAGTCCCAATGCACGAGTCATCTGCACGTCACTGGCATATACTATTCCACCAATGCTTAATCCAATAATTTATGTTTTAAACACAGCTGAAATCAAAGACATAATTTGGaaagtgtttaaaaacaaatctgtggCAGTTGAGAGTATTTCAAAATGACTGAAATGTTTATGCTGGCTTCTGTTATTACATTACTCATATGAAGATGCTTGCTCAAGGTTTATATgatttacaatataaaaaaattgtatttatatggtAGCTAAATTATCACTGTCatctacaaatgtattttttttaaacaattgactTTGAACTGAAGACTCCCTAATGTATTGTTGTTTGACTTTGTAAAACGGGTCAATTTTGGCATGAGTATACTGTATGCTGAACCAAGATTTAAAGCTTTTTATTGTGCGGCTACTGCTTTTACTTTGCTTGTTTCtgcgtttgttgtttttttttccttttatgttgtacagtaataaataaacaatattaatgaacaaa
>TCONS_00018383
TGAACAGAACACCAACCGCAAAGACTGCCatgaattttttaaatgaaagtttttACCAGAATATCTCTTTTGTTCATCCTCAGTACTTTTACATTATTGGACTTTCCGGTACACCTTACAGCAGTTATTTCTACGTTTTCTTATTTATCACATATTTCATTACTTTATTTGGGAACTCTGTAGTTCTTCTCATTATAGCTCTTGAGCGGAGTCTGCACAGTCCAAAGTACATTGGTGTGTTTAACTTGGCCTTGGCTGATATTGGTGAAACTAATGCTCTGATTCCTAACATGGTGAAGACTTTTCTGTTTGACTCACAGTACATCTCTTATAATGCTTGCTTGGCAAACATGTTTTTTGTGTTCCTCTTTAGCTCCATACAAAGCTTTGCTCTTCTTGTTCTTGCCTTTGATCGCTTTGTTGCGATTTGTTTGCCATTAAGATATCATGCTCTTGTGAATAATACCACTATGCTTTTAGCTTTCGCTGCAGTTTGGGCATTTAACTCCTTTGTGGTGGCCTTGATGGTGTCTTTGATCACCCGACTTTCCTTCTGTCAGTCTAATATGATACAGAGTTATTTTTGTGATCACGGACCAGTGTATAGGATAGCATGTAATGACTTTAGTATAAATAAGTTTATGGCTTTTCTCATAACTGGTTTATATCTTGTAATCCCACTCTTTCTTATAGTCCTGTCATATCTTGGCATTTTTCTTGCTTTAACCAAAATTACGACTTTTGAAGGACGTATAAAGGCATTGAAGACCTGTGTTTCTCATCTGTTGTTAGTAGGAACATTATTCCTCCCTCTATTTTGCACATACTTTGCACAGCTTTTACTTTCTCTCAGTCCCAATGCACGAGTCATCTGCACGTCACTGGCATATACTATTCCACCAATGCTTAATCCAATAATTTATGTTTTAAACACAGCTGAAATCAAAGACATAATTTGGaaagtgtttaaaaacaaatctgtggCAGTTGAGAGTATTTCAAAATGACTGAAATGTTTATGCTG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010308-14 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory epithelium and olfactory receptor cell.

Ensembl:

ensembl_id ENSDARG00000041024

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018382 False 1477 mRNA 0.35 2 31389403 31390985
TCONS_00018383 True 1024 mRNA 0.36 1 31389737 31390760

Neighbor

gene id symbol gene type direction distance location
XLOC_009350 or111-5 coding downstream 5815 31382015 ~ 31383588 (-)
XLOC_009349 or111-4 coding downstream 16917 31371190 ~ 31372486 (-)
XLOC_009347 or111-2 coding downstream 22661 31331356 ~ 31366742 (-)
XLOC_009348 AL845428.2 coding downstream 27262 31361787 ~ 31362141 (-)
XLOC_009346 or118-2 coding downstream 65471 31320017 ~ 31323932 (-)
XLOC_009352 or111-7 coding upstream 8938 31399923 ~ 31401361 (-)
XLOC_009353 or111-8 coding upstream 13821 31404806 ~ 31406093 (-)
XLOC_009354 or111-9 coding upstream 16855 31407840 ~ 31409013 (-)
XLOC_009355 or111-10 coding upstream 21610 31412595 ~ 31413998 (-)
XLOC_009356 or111-11 coding upstream 26901 31417886 ~ 31419805 (-)
XLOC_009344 AL928851.1 non-coding downstream 73855 31315209 ~ 31315548 (-)
XLOC_009342 AL928851.2 non-coding downstream 89725 31299563 ~ 31299678 (-)
XLOC_009333 AL928870.1 non-coding downstream 376691 31005981 ~ 31012712 (-)
XLOC_009331 NA non-coding downstream 465314 30923150 ~ 30924089 (-)
XLOC_009360 AL929092.1 non-coding upstream 156749 31547734 ~ 31547852 (-)
XLOC_009362 CR388091.1 non-coding upstream 672307 32063292 ~ 32063409 (-)
XLOC_009364 NA non-coding upstream 1022329 32413314 ~ 32433673 (-)
XLOC_009366 CR855389.2 non-coding upstream 1242305 32633290 ~ 32635777 (-)
XLOC_009367 NA non-coding upstream 1422751 32813736 ~ 32817995 (-)

Expression


Co-expression Network