CI01000046_00499754_00526138


Basic Information

Item Value
gene id CI01000046_00499754_00526138
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 499754 ~ 528550 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_00499754_00526138.mRNA
ATGAATATTAAGCCACTCTCTAGGAAAGTTCTTATATTCATACAGCAGCTTGCGCTCAGCGCTCGGATTGGCCGGTGGACGCGTACGCGGAGCGCATGCGCAGACAGGAGCACATCGTGTACGCGGTGCGGAGAGGTCTCGGATTGCGGGCGTCTGGACTTTAAAAGCGGGCGTCACCTCGCGGCTCCGCATCAGCATCTTCAGGCGAGAGAACAGCTGAAACACTCGCGCGCTGCTGGTGCTGTCAATTTATCACTTGCAATGATGTCGCTGCAGAAACCTCCCCTCAGGCGTAGTGCATCAACCATAGAATCGACCAATCACAGCAGCTCGTTGTTGACTCCGCCCACCTCCCTTAATTTACGCTCCTCCCACAACCAGCAGCTGAGCTGCGACACCATAAAAGAAGGCGTGGTCACGGATTCCAAGGAAACACAAAGCTCTTCAAAGAGTCGTCAAAAATATGCGCTGACGAATATTCAGAATGCAATGGGTTTGAGCCAAAACCCCGCCCCTTTGAGCCAAAGCCACGCCCCTGTGCACAGTAAACCCGCCCCCACCAAATCAGCCTCTTCTTCGTCTCTTTACTGCTCCTCGCTTTCCTTTTCCACCTCCAATCCCAAACTGGCCAAAAACGGCACCAACCTGCAGCTGAAAGAGGAGCAGCTGGACCTCAACAAGAATGACAAGAACCTTCTGAGCAGGAGCAGCTGGGATTGGCTAGAGGGGAAGGACAACCAGAAGAACCCTACAATCAGAAGGAGGACCAAGAGCTTTCTAGAATACCATCGAGAGGAGGAGGCGTCCAGCAGCCCCAACAAAGACATGCAGGCCGAGGAGAAACACCTCCTGCCTAAGCTGGAGGCGCAAACAAAGGCCCAAATGAGCCCGGCGACGCTACGTCTGGAACTGAGACGAGACGAGGCCGAGGAGTCGCCCGAACGCCTGGTGCGACCGGAAAAACAGGTGGAGGACGAGGAGGAGGAAGATTCCAGCTGGACGACACTGTCTCAGGAGAGTCCGTCTGTGGAAACACCTCAGGAGACAGCTGTTTGGGAAGAGCCTCCTCAGCTGCAGGACGTGCCGCAGGAGTATTTTTGGCGAGATCAGCCTGTAGTCTGTGACGCCCGCGCTGACTTGGAGGCGGAGCCAAGAGTGAAGGGGGCGTGTCTGCCTGTGCCCTGCACTAAAGCACAGACCGAGGTGTTTTGGGTCCAGTATCTGGGCTGGTTGGAGGTGCGGGACGCAGATATGGTGTCTGGGAAGAGCGGTGCAGTGGTCAGCGACTGCATCCAGCAGCTGCAGCAGCGCAGAGAGATGGACAGCAGCCGGACGAGGAGACAGACGATGCTGCTGGTCCTGCAGGATGTCACTCTCTCCCTCATTGACCCCACTGACCACACCCTCCTGCACTCTCAGCCAATCAGCTGCATCCGCGTGTGGGGAGTGGGGCGGGGCCTCAGCAGGGATTTTGCGTATGTGGCTCGTGACAAGAACACGCGTGTGTTAAAATGTCACGTGTTTCAGTGTGAGAGTCCTGCGGAAACCGTCGCCAGCAGCCTGAAGCAGATCTGCTCCAAGATTATGGCCGAACGCAGGAGCGTCGGTCCCGGCGCAGGTTCCTCATCTCAGTTCAGCTCTGATGTTCCTCTCAGAGTAGAGTTTCCAACGCCAAAGACTGACCTACAACACAGCTTCCATGTGCTTTACCTGGGAATGACGTCAGTACTGAGACCTATAGGAATGGACATGATAAATGGAGCGATAGACAGTCTGATGTCCTCCGCAGGGAAAGAGGACTGGACCCCCGTCCTGCTGAACGTCGCTGACGCCACGATTACTGTCATCAAAGAAAAGTTGCGGTATCAGAAGTGTCTGGGGAAGACCGGCTCCTCGGCTCCGTCCTCTAGCGACTCCGTCACCCGCCGCGTAACGTCCAGCGTGAAGCGGGGCGTCCAATCAATCATAGACACTCTGAAAAAGAAGCCCGCCCCCGAGGTTCCCCACCAATGACGGAACAGAACAGCTGTGATGGACAGCAGGTGTGTGTGCGTGTGTGTATTTACTGATGCAGCCGAGAAGAGCAACACAACATAACAAAAAAAGACAAAAAGTGTAACGCGAGATGAAGGAGATGTCAGTGTGCGTAACGAGAAGCATTTCGAACGACTGTCCTGAATGAAGCATGCCTCTGCCTTACACTAACACATTTTCACTGAAGTATTTCGAGGCCGTCAGAGTTCATGTCTCACCGATCCCGTCACGCTCAGATCAATGTAACTCTTTACACGCGTGACCTGGATTCAAGCTCCAGTCTGATTTGTGCCATAAGTGTGTTTCATTTCAAACCACCCACTCATTCAAAGCGACTTGCACACTTGGGAAATTGGATCCTTTGAAATTTTGTTCTCTTTCTGCAAGAAATTTAGAGGGAATTTTCTGGTGTTGGGTATTGGGAAAGGAACGTGTGTGTAAAATGTTTCAGTGCATCAAGCACACAGCCTGACGGATCAGATCATGATGTTCAGTGGGAATATCGTAACACACAGTCTGTATATCATCTGCTCAGATCGATACTGTAATGCCGAGCGAAATGGGAATTTTCTGACCACACAAATACACATGCACCTCATTTAAACACTTAGGCCTGGAAGATTCCCTGTGCAAGTACGCAAATGCAGACGTGAATGCTTGGCAGACGTGCACTCCTTTTGTACATACGCAACACAAGAGACCTCAGTACTGTCCTTCAAATGTCTAAATGACATTAAACCAGATGTTTTATTCAGATGTCCAGCTAAAGACATGTTCACGTTACTCAACATTAAAGCCTGACATACAAAATACTAGTTGAAATGGAAGTTTATTGAACATCATATTTGATCTTTACTAGAAGATGTTGAAACAGTATCGATTCGATTTGTAAAATCTGA
>TU221157
TTTTCCTGTAGTTGCGGTATCAGAAGTGTCTGGGGAAGACCGGCTCCTCGGCTCCGTCCTCTAGCGACTCCGTCACCCGCCGCGTAACGTCCAGCGTGAAGCGGGGCGTCCAATCAATCATAGACACTCTGAAAAAGAAGCCCGCCCCCGAGGTTCCCCACCAATGACGGAACAGAACAGCTGTGATGGACAGCAGGTGTGTGTGCGTGTGTGTATTTACTGATGCAGCCGAGAAGAGCAACACAACATAACAAAAAAAGACAAAAAGTGTAACGCGAGATGAAGGAGATGTCAGTGTGCGTAACGAGAAGCATTTCGAACGACTGTCCTGAATGAAGCATGCCTCTGCCTTACACTAACACATTTTCACTGAAGTATTTCGAGGCCGTCAGAGTTCATGTCTCACCGATCCCGTCACGCTCAGATCAATGTAACTCTTTACACGCGTGACCTGGATTCAAGCTCCAGTCTGATTTGTGCCATAAGTGTGTTTCATTTCAAACCACCCACTCATTCAAAGCGACTTGCACACTTGGGAAATTGGATCCTTTGAAATTTTGTTCTCTTTCTGCAAGAAATTTAGAGGGAATTTTCTGGTGTTGGGTATTGGGAAAGGAACGTGTGTGTAAAATGTTTCAGTGCATCAAGCACACAGCCTGACGGATCAGATCATGATGTTCAGTGGGAATATCGTAACACACAGTCTGTATATCATCTGCTCAGATCGATACTGTAATGCCGAGCGAAATGGGAATTTTCTGACCACACAAATACACATGCACCTCATTTAAACACTTAGGCCTGGAAGATTCCCTGTGCAAGTACGCAAATGCAGACGTGAATGCTTGGCAGACGTGCACTCCTTTTGTACATACGCAACACAAGAGACCTCAGTACTGTCCTTCAAATGTCTAAATGACATTAAACCAGATGTTTTATTCAGATGTCCAGCTAAAGACATGTTCACGTTACTCAACATTAAAGCCTGACATACAAAATACTAGTTGAAATGGAAGTTTATTGAACATCATATTTGATCTTTACTAGAAGATGTTGAAACAGTATCGATTCGATTTGTAAAATCTGAATAAAATTCAACAATGATTCAACATCAGCAAACCATCATATTTTTCTACCGTTGTCTTTAAAGATCAACATTGTCTGAACACAGTTCCTCACTGTAGAGGACGTCGGGTTACGCTAATGCCCTCTATAACTGCCTTTGTGGCAATGCTGAAGATGCAAAACGTACTTGCATTGCATTATGAATCGTGGAACGCAGTGATGCATGAACTCGAGCTTGCTTAGCTAAAAGATTTTGTGTACTTGCATAGAGCGTTTCAGACTTGAGATGAGCCACACACGCACACATCGAGCCCCTGCTACAGTATGTCGAGAATAAACAAACACAGGAATGTTATTTCTCACAAAATGGTATTTTAAAACCCAGATCAACCACTAAGACACTCATTTTTACACCATATTAATGTAACATGTTGTGGAAATAAATTACA
>TU221158
TTTTCCTGTAGTTGCGGTATCAGAAGTGTCTGGGGAAGACCGGCTCCTCGGCTCCGTCCTCTAGCGACTCCGTCACCCGCCGCGTAACGTCCAGCGTGAAGCGGGGCGTCCAATCAATCATAGACACTCTGAAAAAGAAGCCCGCCCCCGAGGTTCCCCACCAATGACGGAACAGAACAGCTGTGATGGACAGCAGGTGTGTGTGCGTGTGTGTATTTACTGATGCAGCCGAGAAGAGCAACACAACATAACAAAAAAAGACAAAAAGTGTAACGCGAGATGAAGGAGATGTCAGTGTGCGTAACGAGAAGCATTTCGAACGACTGTCCTGAATGAAGCATGCCTCTGCCTTACACTAACACATTTTCACTGAAGTATTTCGAGGCCGTCAGAGTTCATGTCTCACCGATCCCGTCACGCTCAGATCAATGTAACTCTTTACACGCGTGACCTGGATTCAAGCTCCAGTCTGATTTGTGCCATAAGTGTGTTTCATTTCAAACCACCCACTCATTCAAAGCGACTTGCACACTTGGGAAATTGGATCCTTTGAAATTTTGTTCTCTTTCTGCAAGAAATTTAGAGGGAATTTTCTGGTGTTGGGTATTGGGAAAGGAACGTGTGTGTAAAATGTTTCAGTGCATCAAGCACACAGCCTGACGGATCAGATCATGATGTTCAGTGGGAATATCGTAACACACAGTCTGTATATCATCTGCTCAGATCGATACTGTAATGCCGAGCGAAATGGGAATTTTCTGACCACACAAATACACATGCACCTCATTTAAACACTTAGGCCTGGAAGATTCCCTGTGCAAGTACGCAAATGCAGACGTGAATGCTTGGCAGACGTGCACTCCTTTTGTACATACGCAACACAAGAGACCTCAGTACTGTCCTTCAAATGTCTAAATGACATTAAACCAGATGTTTTATTCAGATGTCCAGCTAAAGACATGTTCACGTTACTCAACATTAAAGCCTGACATACAAAATACTAGTTGAAATGGAAGTTTATTGAACATCATATTTGATCTTTACTAGAAGATGTTGAAACAGTATCGATTCGATTTGTAAAATCTGAATAAAATTCAACAATGATTCAACATCAGCAAACCATCATATTTTTCTACCGTTGTCTTTAAAGATCAACATTGTCTGAACACAGTTCCTCACTGTAGAGGACGTCGGGTTACGCTAATGCCCTCTATAACTGCCTTTGTGGCAATGCTGAAGATGCAAAACGTACTTGCATTGCATTATGAATCGTGGAACGCAGTGATGCATGAACTCGAGCTTGCTTAGCTAAAAGATTTTGTGTACTTGCATAGAGCGTTTCAGACTTGAGATGAGCCACACACGCACACATCGAGCCCCTGCTACAGTATGTCGAGAATAAACAAACACAGGAATGTTATTTCTCACAAAATGGTATTTTAAAACCCAGATCAACCACTAAGACACTCATTTTTACACCATATTAATGTAACATGTTGTGGAAATAAATTACATCACAAAAAAAAGTGTCTGTCCTTGTTTTATTTGCATGCATGTTCCAAATGACATTGGAAAATATGCTTGTTTTGATGGCAGTGACATTTAAATGGTAAAGTTTAGTAATAATAATGAGTTAGATGGGATGTCTAATAAAGATTAAAGGTCTTAAATACTGAGATAAGAGTAAAATACTGACGGTAGCCGCACTAATGTGTGTGTCAGAGCCATGGCCGCAGATGATTCAGTCTCGCTCTGAACGCCGTTTGGCTTCGAGGGAGAGCCGGTGTCAAGTTACTCCACTGCAGGTGGGTGTGGGCGGGGTTTGTAAGGGCGTGGCTCCGCCTCTGTGGAAGAAGACTGTCACTTGACAACAGAACAGGAGGAAACGTGACAGTCGCCGGCCGCAGCACTTCATGTCGGCCTTTAGGTGGCGCAACTGCCACGGAGGAGTGAATGTCATTTGCAGATACTGCAGCCGCGTTCAAACCAGTCAAACTGTTACAGTATAAACTGGAGAAAGAGGTGGGGTTAGGGGTGGAGCCTGTTGTATTAAGGGTGGAGTCTGTGGTGTTAGGGGTGGAGCCTGTGGTGTTAGGGGTGGAGCCTGTCTTGGAGAACACGCCCTGAGAGAGACGTCGAGAACTACAGGGTTTATCTGTGGAGATACAGAAGTAAACAGGAAGTTAGGTTAGTTTTCCTCAGTGGTTTACTCTGAAAAAAACATTACCGTTAACGTGTTAACTGTCAGTGTAGCTTTTTTAATAGCCTTTTTCCTCATCACATATTTTAATAATCACAAATTGCGTATCATTTGAAAGCTTCACTCAAAATTCATCCTGTGAAAACCTTTTTGAAAACAGACATTGCGTTACTCAGGAAACAGTACTTTAGCGGCTCAATTTTTGTGATATCAACTTCAAATTTGGAACACAACTTGGTGAGAGATATGGCTTCAGATTTTGTAAAATATGTAAAAGAAAAACAGACCAATCTTAGGTCTGTATTCCAAAGCATTCATGAATTATGTCCACTTAAGTTCAGATCTGTGCTCAAAAGCCACAGACAGTTAACAGGTTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_00499754_00526138.mRNA False 2933 mRNA 0.52 11 499754 527058
TU221157 False 1514 lncRNA 0.43 1 525972 527485
TU221158 True 2579 lncRNA 0.43 1 525972 528550

Neighbor

gene id symbol gene type direction distance location
CI01000046_00494421_00496860 KIAA0141 coding upstream 2796 494421 ~ 496958 (+)
CI01000046_00492034_00493262 KIAA0141 coding upstream 6416 492034 ~ 493338 (+)
CI01000046_00477221_00481241 NA coding upstream 18511 477221 ~ 481243 (+)
CI01000046_00436111_00443677 NUDT6 coding upstream 54256 436111 ~ 446757 (+)
CI01000046_00107578_00163060 NA coding upstream 336619 104109 ~ 163135 (+)
CI01000046_00670755_00673139 NA coding downstream 143697 670755 ~ 673447 (+)
CI01000046_00770575_00774675 CDIP1 coding downstream 243517 770575 ~ 776269 (+)
CI01000046_00781088_00781355 CP033, SNRNP25 coding downstream 254030 781088 ~ 781355 (+)
CI01000046_00784993_00786387 NA coding downstream 257587 784645 ~ 787080 (+)
CI01000046_00893353_00931079 SHISA9B coding downstream 366241 893299 ~ 932443 (+)
G194762 NA non-coding upstream 12414 486933 ~ 487340 (+)
G194727 NA non-coding upstream 32471 464614 ~ 467283 (+)
G194721 NA non-coding upstream 39409 458008 ~ 460345 (+)
G194750 NA non-coding upstream 74330 407504 ~ 425424 (+)
G194779 NA non-coding downstream 61067 588125 ~ 588490 (+)
G194780 NA non-coding downstream 62512 589570 ~ 619405 (+)
G194803 NA non-coding downstream 134929 661987 ~ 664124 (+)
G194809 NA non-coding downstream 150327 677385 ~ 677650 (+)
G194739 NA non-coding downstream 154645 681703 ~ 682678 (+)
G195003 NA other downstream 634099 1161157 ~ 1161690 (+)
CI01000046_01540075_01668012 HS3ST4 other downstream 1012436 1539494 ~ 1668012 (+)
CI01000046_01865451_01881353 NA other downstream 1345737 1865451 ~ 1881369 (+)
CI01000046_02451052_02454565 MAFK other downstream 1912859 2442395 ~ 2457280 (+)
G196936 NA other downstream 2659937 3186995 ~ 3194271 (+)

Expression


Co-expression Network