CI01000046_00784993_00786387


Basic Information

Item Value
gene id CI01000046_00784993_00786387
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 784645 ~ 787080 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_00784993_00786387.mRNA
CTTTAAATATTGTTCCTGTTACATTTATATAACATGACCAGCCTCTTATTTCCTTGATACTGCAATGTGAAGAGCGACTGATGAGACGCTACAGCACACATGGGTAACTATTTATGTCAGTTTTAACCATTTATTATTATTTACTGTCTATGATATTTACTGTCTATTCACATTGTAATTGCGCTGGGGTTAAATAGTATTTTTCATATCAGGAAAGAAACTTTCTAATGAACAGTTCTGTATTCTTGACAAGACGCTCTCATTAAGCTGTGAAGCCCTATTGCATGTCTTTCAGAGAGGACACTATGAAGGTTTGAGGCTCTCTGAGGTTTAAGTGAGCTGCCGAACATGCCTCAATCTGATGAGCATTTGTCGAGTATCTTCGAAGAGCTGAGCAAGCTGTCCTTTCGCAGACAGCAGCTCACGGACCGACGGAATGTCCTGGCCATGCTCATCCAATTCAAGCGAAACAACGGCCAAAATGAGCAACAGTATTCCAAAGAAACTGGAGAACTTCAACAAATTGACGAGGAGCTTAAAGTTCTTTCTGACAGGAAGATTGAACTTGAGGAAGAGCAAGAGGCGGGCTCCCATTTAATAGACACAACTAGGTCATCTAGCGTCATATTTGTGGACAACCCACCTCCGTTTCCAGCTCCGCAGGTTATTGTGGATTTGAACCAACTTCCTCGACACCCCTCTCAGACACAGTGTCAGTTCTGTCGCCAATATGTAACCACTGAGGTCATGACCAAAGCTGGCAGTGTGACCTATCTTATATGTTTTATTTCCATGGTTTTTTGTTGTATCGCTGGCTGCTGTCTAATCCCATTCTGCGTGGATTCCTGCAAGGACGTCATTCACAAATGTCCAAAATGTCGCAGTAACATACACACGTGCAAAAAGTTATGAGGAAAGGAATTCTAATAATGGCAGTTGAACTGAATCTGCATCTGAAGAATCTTATTTTTGATTATCGCACACAACTAAGTGGCTGGAATTGTTTCGGATATGTCATCCTGACCTTTTTACAGGGACAATCCCCATGGAATTACCTGCGTGCCTTTCTTACAGGATACAACTGTGAAATCTGATATTGTTTACTCTCTGCAGGGACCAAGCCAACCTTTCGGTTAGCCTGAAAACTGCCCAACTATCTAAACTGAAAGGAAAATGGAATATATCTGGATCTTCAGGGTGACTTCCCAGTCTTCTGGTTTGAACTTCAATGCTACGTTTTTTTTTGGGGTTATTTTTTTAAGCATTAAACTTTAACAGGAACATAAAAAATGGAATCAAGACGCAAGACTATGTGACCAAATTCCTGATTGCTTTTGGATGTAATAGAGTAGGAGTTCTTCAGCTGATAAAAAGGAATTCAAAATGATTATATCTTATTTTGTAGACCATAAGTTATGAACTTTCCTTTGAGAAAAATATTATCTCTGGTAAAATGTCAAATGTTAAGTTTATTTATTGTGTTGTCAGCTTGCTTTGGATCATAACGCAGAGCTGGAACATGGTTCTGTGCTTTGGAGGGCCAAACAAGTCATTTCAGTGATTTCAAATACAGAAACATTTTAATGATAAAAGGCTGTATATACA

Function

NR:

description
Zgc:92858 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_00784993_00786387.mRNA True 1605 mRNA 0.39 5 784645 787080

Neighbor

gene id symbol gene type direction distance location
CI01000046_00781088_00781355 CP033, SNRNP25 coding upstream 3290 781088 ~ 781355 (+)
CI01000046_00770575_00774675 CDIP1 coding upstream 8376 770575 ~ 776269 (+)
CI01000046_00670755_00673139 NA coding upstream 111198 670755 ~ 673447 (+)
CI01000046_00499754_00526138 NA coding upstream 257587 499754 ~ 528550 (+)
CI01000046_00494421_00496860 KIAA0141 coding upstream 287687 494421 ~ 496958 (+)
CI01000046_00893353_00931079 SHISA9B coding downstream 106219 893299 ~ 932443 (+)
CI01000046_01026787_01028640 IGFALS coding downstream 239422 1026502 ~ 1028869 (+)
CI01000046_01067894_01070331 H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421 coding downstream 279856 1066936 ~ 1070777 (+)
CI01000046_01149090_01159654 NA coding downstream 361856 1148936 ~ 1160102 (+)
CI01000046_01246234_01251650 NA coding downstream 458652 1245732 ~ 1251689 (+)
G194716 NA non-coding upstream 24955 687004 ~ 759690 (+)
G194734 NA non-coding upstream 40731 722652 ~ 743914 (+)
G194810 NA non-coding upstream 100050 683788 ~ 684595 (+)
G194739 NA non-coding upstream 101967 681703 ~ 682678 (+)
G194809 NA non-coding upstream 106995 677385 ~ 677650 (+)
G194823 NA non-coding downstream 12214 799294 ~ 800928 (+)
G194964 NA non-coding downstream 238753 1025833 ~ 1026053 (+)
G194968 NA non-coding downstream 249473 1036553 ~ 1036803 (+)
G194977 NA non-coding downstream 285245 1072325 ~ 1072586 (+)
G194979 NA non-coding downstream 286305 1073385 ~ 1073664 (+)
G194721 NA other upstream 324300 458008 ~ 460345 (+)
G195003 NA other downstream 374077 1161157 ~ 1161690 (+)
CI01000046_01540075_01668012 HS3ST4 other downstream 752414 1539494 ~ 1668012 (+)
CI01000046_01865451_01881353 NA other downstream 1085715 1865451 ~ 1881369 (+)
CI01000046_02451052_02454565 MAFK other downstream 1652837 2442395 ~ 2457280 (+)
G196936 NA other downstream 2399915 3186995 ~ 3194271 (+)

Expression


Co-expression Network