CI01000046_01067894_01070331 (H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421)


Basic Information

Item Value
gene id CI01000046_01067894_01070331
gene name H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1066936 ~ 1070777 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_01067894_01070331.mRNA
ATATAAATAGGAGCCCATCCTCCTATTTTCAAATACGAGAGATCCGCCGAGGGAGACAGATCGTGGTTTAACGAGGTTCGTGTGAGTAAAGTTTAATTTATTTGGTAAATATTTTGACATTAGACAGTAATCATAGTAGTTCCCTTAGTTAAAACAAAACCATACACCATTTATAGAGTTGATTGGATTTTCTTATTTTGCTTATTGACTACTCATTTGCTGGCTAATTTGTTAGTTTGGGTTAATATTTCAAACACTAAGTTACTGTCCTTGAACATAGTTCATTTAATCATTATGTGGCGTTTTTAGATTCGTTAAACTTATTTTACGCGGGCTTTGAAGTATAAAGGACATCTGATAATTCTGTGCTGGTTTGTCAATCTACGTTTTTGCCCGCCATTTTGGACAATGGTTTGTTCAGCTTGTTCCTGAAGAGCTCGAGACGAGTTGCCGGTTGTGTTCGGAATGCTGCATCTCCCCTGTGCATCTGCGCTTTTCCCAACTCTTTCTACGTTATGCAATTGCTGTATTCCTGGTTGAAAGTGAGTTTCGTGGTAGGGTGATGTTTAATTAGCAACATAGAGGGGTGAACCGGGTCCTGTTGCAGATAGAGGCTGATACCGGAGCGGCTGTTACAGAGAAAGCACAGCAGCTCCTGTCGTCTGATGCAAATGTACATCTGTGATGCTCGTTTGGTTTTGTTCAAGGCAAATTACTCGTGTTTTTAGCTGGTTTATGTTGAAGTTCTCATATTGTAGGCACTTAACGTTTTACATCTTTATAAAATGAGACATTTTTATATCAAGTAGCTGCAGCTCTTGAGCGGAAGTGGTAAAGGCAAACCGCAAGACCCGGATGAGACCGCCATTTTAAGTTACTGTTTGATTTTTATTTTAAAACTAGAAGAACTCAGTATTTAAATACTCGTTTTTTCTCTAATTGTAGAGATTGAGAAACCATGGCTCGTACCAAGCAGACCGCGCGTAAATCCACTGGAGGAAAGGCGCCAAGAAAACAACTGGCGACTAAAGCCGCTAGGAAGAGCGCGCCCTCTACCGGTGGCGTCAAGAAGCCCCATAGATACAGGCCTGGAACTGTTGCTCTGAGAGAGATTCGTCGTTATCAGAAGTCAACAGAGTTGCTCATCCGCAAGTTGCCATTTCAGCGTCTGGTCAGGGAGATCGCACAAGACTTCAAAACTGACCTGAGGTTCCAGAGTGCAGCCATTGGTGCACTTCAGGAAGCAAGTGAGGCCTACCTTGTCGATACGAAATTAACATGTCTCGCTTTGGCTCTTTCCCAGGGGATCAACTGTGGGGGTCTGCATTTTGGCTCTTGTCTAATGGGCCTTGTCTGTCATTATTTCACTTGTCTGTATCTTTCTGTGATGCTCACATCCTAAGGCTGTTCTCATCATGGATTCTCAAATCTCTGTTAGAGGCACACAACCTTACTCATGCCCTATAGGTCTGTCTGAGCTTCCCAAGTCACTCTTTAGTTTCTGTTTTAATGTGTGGATTGGTTTTTTTATATATATAACCACATAATAGTAAATTATACTTTGATGATGTCCATACAAATTCATAAATAGTTATTCAAACAATGCTTACATATTTTTCCCAGGCTGGGCTGTCACAGCTGGAAAAACATTTCTTGGTTTTGCCAGGCTGTATCTTTTTTTCTTGCTGACTAACCAGAACTGCACGTTCTGTTGCGCTGGTCCATATGAACCGATCACTCTGTATCAGCACCCAGTACTCCATATACTGAAACATGCTGGAAACATGCAGTCATTATTCTGACTGATAGTTGTATTGCTTCAAAATGCATTTTCTCAACTATATGTCA

Function

symbol description
h3f3a Part of nucleosome. Is expressed in pharyngeal arch. Orthologous to human H3-3A (H3.3 histone A).
h3f3c Orthologous to human H3-3B (H3.3 histone B).
h3f3b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Involved in brain development and response to hormone. Predicted to be located in chromosome, telomeric region and nuclear chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H3-3B (H3.3 histone B).

GO:

id name namespace
GO:0042393 histone binding molecular_function

KEGG:

id description
K11253 H3; histone H3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_01067894_01070331.mRNA True 1848 mRNA 0.41 4 1066936 1070777

Neighbor

gene id symbol gene type direction distance location
CI01000046_01026787_01028640 IGFALS coding upstream 38067 1026502 ~ 1028869 (+)
CI01000046_00893353_00931079 SHISA9B coding upstream 134493 893299 ~ 932443 (+)
CI01000046_00784993_00786387 NA coding upstream 279856 784645 ~ 787080 (+)
CI01000046_00781088_00781355 CP033, SNRNP25 coding upstream 285581 781088 ~ 781355 (+)
CI01000046_00770575_00774675 CDIP1 coding upstream 290667 770575 ~ 776269 (+)
CI01000046_01149090_01159654 NA coding downstream 78159 1148936 ~ 1160102 (+)
CI01000046_01246234_01251650 NA coding downstream 174955 1245732 ~ 1251689 (+)
CI01000046_01255895_01262232 NA coding downstream 185118 1255895 ~ 1262547 (+)
CI01000046_01275798_01283718 PDPK1A coding downstream 205021 1275798 ~ 1284100 (+)
CI01000046_01289846_01293954 KCTD5A, KCTD5 coding downstream 218791 1289568 ~ 1294336 (+)
G194968 NA non-coding upstream 30133 1036553 ~ 1036803 (+)
G194964 NA non-coding upstream 40883 1025833 ~ 1026053 (+)
G194823 NA non-coding upstream 266008 799294 ~ 800928 (+)
G194719 NA non-coding upstream 276247 735070 ~ 790689 (+)
G194716 NA non-coding upstream 307246 687004 ~ 759690 (+)
G194977 NA non-coding downstream 1548 1072325 ~ 1072586 (+)
G194979 NA non-coding downstream 2608 1073385 ~ 1073664 (+)
G194987 NA non-coding downstream 15390 1086167 ~ 1086399 (+)
G194988 NA non-coding downstream 15754 1086531 ~ 1086796 (+)
G194991 NA non-coding downstream 19439 1090216 ~ 1090428 (+)
G194721 NA other upstream 606591 458008 ~ 460345 (+)
G195003 NA other downstream 90380 1161157 ~ 1161690 (+)
CI01000046_01540075_01668012 HS3ST4 other downstream 468717 1539494 ~ 1668012 (+)
CI01000046_01865451_01881353 NA other downstream 802018 1865451 ~ 1881369 (+)
CI01000046_02451052_02454565 MAFK other downstream 1369140 2442395 ~ 2457280 (+)
G196936 NA other downstream 2116218 3186995 ~ 3194271 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location