Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000046_01289846_01293954 |
| gene name | KCTD5A, KCTD5 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 1289568 ~ 1294336 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| kctd5a | Predicted to enable cullin family protein binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein homooligomerization. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human KCTD5 (potassium channel tetramerization domain containing 5). |
| kctd5 | Enables identical protein binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Located in cytosol. |
| id | name | namespace |
|---|---|---|
| GO:0005737 | cytoplasm | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000046_01289846_01293954.mRNA | True | 1224 | mRNA | 0.44 | 4 | 1289568 | 1294336 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000046_01275798_01283718 | PDPK1A | coding | upstream | 5468 | 1275798 ~ 1284100 (+) |
| CI01000046_01255895_01262232 | NA | coding | upstream | 27021 | 1255895 ~ 1262547 (+) |
| CI01000046_01246234_01251650 | NA | coding | upstream | 37879 | 1245732 ~ 1251689 (+) |
| CI01000046_01149090_01159654 | NA | coding | upstream | 129466 | 1148936 ~ 1160102 (+) |
| CI01000046_01067894_01070331 | H3F3AP4, H3F3C, H3F3B, H3F3A, GM6421 | coding | upstream | 218791 | 1066936 ~ 1070777 (+) |
| CI01000046_01318513_01343464 | USP31 | coding | downstream | 22334 | 1316670 ~ 1344195 (+) |
| CI01000046_01540075_01668012 | HS3ST4 | coding | downstream | 245739 | 1539494 ~ 1668012 (+) |
| CI01000046_01865451_01881353 | NA | coding | downstream | 571115 | 1865451 ~ 1881369 (+) |
| CI01000046_01903950_01922429 | KDM8 | coding | downstream | 607754 | 1902090 ~ 1922439 (+) |
| CI01000046_01933932_01935589 | NA | coding | downstream | 638554 | 1932890 ~ 1937822 (+) |
| G195049 | NA | non-coding | upstream | 60135 | 1229228 ~ 1229433 (+) |
| G195048 | NA | non-coding | upstream | 60649 | 1228716 ~ 1228919 (+) |
| G195047 | NA | non-coding | upstream | 61701 | 1227485 ~ 1227867 (+) |
| G195038 | NA | non-coding | upstream | 81240 | 1206445 ~ 1208328 (+) |
| G195018 | NA | non-coding | upstream | 132236 | 1157127 ~ 1157332 (+) |
| G195535 | NA | non-coding | downstream | 90416 | 1384752 ~ 1384970 (+) |
| G195564 | NA | non-coding | downstream | 102427 | 1396763 ~ 1397086 (+) |
| G195909 | NA | non-coding | downstream | 449464 | 1743800 ~ 1744017 (+) |
| G196035 | NA | non-coding | downstream | 572168 | 1866504 ~ 1866807 (+) |
| G196038 | NA | non-coding | downstream | 576362 | 1870698 ~ 1870980 (+) |
| G195003 | NA | other | upstream | 127878 | 1161157 ~ 1161690 (+) |
| G194721 | NA | other | upstream | 829223 | 458008 ~ 460345 (+) |
| CI01000046_02451052_02454565 | MAFK | other | downstream | 1145581 | 2442395 ~ 2457280 (+) |
| G196936 | NA | other | downstream | 1892659 | 3186995 ~ 3194271 (+) |
| CI01000046_03943890_03945302 | ATP5J2 | other | downstream | 2649492 | 3943794 ~ 3945500 (+) |
