CI01000046_01540075_01668012 (HS3ST4)


Basic Information

Item Value
gene id CI01000046_01540075_01668012
gene name HS3ST4
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1539494 ~ 1668012 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_01540075_01668012.mRNA
ATGGCATTTTGGTCCAGCACTTCGGTTTTTACTTCTAAAGTGCCCCGGAAAATCTTATTCATGTTCACCCTCTCCCTTTCTGTCACCTATCTGTTCTATAGCTTGATGAGCTGTTACAACTCCTTCCAGTTCCAGGAGAACTACGTTTACCAGGGGAGGCTCGTGACAGAGGAAACAACTTTTGTCACGCTGAGGGAGAAACTTTACTCGACCCCTTCCCAGGGTTACCTCGACGAGGAGTTCATCGAGAGGACGGCGACCGAGCAAACTATCGCCGTCTCGAGCGTTAGAAATAGCGTGGGGATCGACGAAAGGACGGCGGGATGGGCGCGAGCTCAGGCGGCTACGACCAGCATGTCGCGCGCTGCCGCCGCTGTTGCTGGAGAGCACGAGCACCCGGAATTCAGCACCACGGACAGCGAGCTTCGGAGAGTGGTGAACTGCACATCGGATTACGGGGAGAAAAAATTGCCCCAAGCCATCATAATCGGAGTGAAGAAAGGGGGTACAAGGGCTCTGCTGGAAGCTCTGCGGGTTCATCCCGATGTTCGAGCCGTTGGGAATGAGCCTCACTTCTTTGACAGGAACTACGAGAAGGGACTGGATTGGTACAGGGAGCTGATGCCGTCTACTCTGGAGGGACAGATCACAATGGAGAAGACGCCCAGCTACTTTGTGACAAACAGCGCGCCGAAGCGCATCCACACGATGGCGAGAGACATTAAACTAATCATAGTCGTCCGCAATCCAGTGACCAGAGCCATTTCGGACTATACTCAGACTCTTTCCAAGAGGCCCGAGATCCCCACCTTCGAAGTGCTGGCGTTCAAGAACCGAACGCTGGGCCTGATCGACGCGTCGTGGAGCGCCTTACGAATAGGGATCTACGCACTTCACCTGGAGAGCTGGATGCAGTATTTCCCCCTCTCGCAGATGCACTTTGTCAGCGGAGAGCGGCTTATCGTTGATCCGGCCGGCGAGATGGCAAAGGTGCAGGATTTCCTGGGACTCAAGCGTATTGTTACTGACAAACATTTCTATTTTAATAAAACCAAGGGATTTCCATGCTTGAAGAAGCCAGAGGACAGCAGTACCCCACGTTGCCTTGGCAAGTCCAAGGGTAGAACTCACCCCAAAATAGACCCCGATGTCATTCGCAGACTGCACAAATTCTACAAGCCCTTTAACATGATGTTCTACCAAATGACAGGGCAAAACTTTCAGTGGGAACTGGAGGAGGATGGCAATTCGCCTGGCTCTCGGGAC

Function

symbol description
hs3st4 Predicted to enable [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in forebrain; hindbrain; olfactory epithelium; and spinal cord. Orthologous to human HS3ST4 (heparan sulfate-glucosamine 3-sulfotransferase 4).

GO:

id name namespace
GO:0030201 heparan sulfate proteoglycan metabolic process biological_process

KEGG:

id description
K09678 HS3ST4; [heparan sulfate]-glucosamine 3-sulfotransferase 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_01540075_01668012.mRNA False 1266 mRNA 0.53 2 1540075 1668012

Neighbor

gene id symbol gene type direction distance location
CI01000046_01318513_01343464 USP31 coding upstream 195880 1316670 ~ 1344195 (+)
CI01000046_01289846_01293954 KCTD5A, KCTD5 coding upstream 245739 1289568 ~ 1294336 (+)
CI01000046_01275798_01283718 PDPK1A coding upstream 255975 1275798 ~ 1284100 (+)
CI01000046_01255895_01262232 NA coding upstream 277528 1255895 ~ 1262547 (+)
CI01000046_01246234_01251650 NA coding upstream 288386 1245732 ~ 1251689 (+)
CI01000046_01865451_01881353 NA coding downstream 197439 1865451 ~ 1881369 (+)
CI01000046_01903950_01922429 KDM8 coding downstream 234078 1902090 ~ 1922439 (+)
CI01000046_01933932_01935589 NA coding downstream 264878 1932890 ~ 1937822 (+)
CI01000046_01963803_01965901 NA coding downstream 295543 1963555 ~ 1968371 (+)
CI01000046_01988070_01995034 UBFD1 coding downstream 318308 1986320 ~ 1995330 (+)
G195564 NA non-coding upstream 142989 1396763 ~ 1397086 (+)
G195535 NA non-coding upstream 155105 1384752 ~ 1384970 (+)
G195049 NA non-coding upstream 310642 1229228 ~ 1229433 (+)
G195048 NA non-coding upstream 311156 1228716 ~ 1228919 (+)
G195047 NA non-coding upstream 312208 1227485 ~ 1227867 (+)
G195909 NA non-coding downstream 75788 1743800 ~ 1744017 (+)
G196035 NA non-coding downstream 198492 1866504 ~ 1866807 (+)
G196038 NA non-coding downstream 202686 1870698 ~ 1870980 (+)
G196050 NA non-coding downstream 293207 1961219 ~ 1961759 (+)
G195003 NA other upstream 378385 1161157 ~ 1161690 (+)
G194721 NA other upstream 1079730 458008 ~ 460345 (+)
CI01000046_02451052_02454565 MAFK other downstream 771905 2442395 ~ 2457280 (+)
G196936 NA other downstream 1518983 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 2275816 3943794 ~ 3945500 (+)
G197055 NA other downstream 2481411 4149423 ~ 4149780 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026710 hs3st4 coding NC_007114.7 CM002887.2 44541322 ~ 44753325 (-)
bowfin (Amia calva) AMCG00018170 hs3st4,LOC103360498,LOC107568293 coding CM030135.1 CM030135.1 3399293 ~ 3399919 (-)