CI01000046_01963803_01965901


Basic Information

Item Value
gene id CI01000046_01963803_01965901
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1963555 ~ 1968371 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_01963803_01965901.mRNA
CTATAAATATAAAGACACATTACATTTATTGAAATGCATTAAATTAAATGAAAAAAAAAAAAAAATCAAACAGTTGGAAATTTCGTTTGGGGATTGTTTTACTCATCATTATAGCCTATTAATTGATGTTAAACTCAACATTTCCATTTATCGTGAAATTAGACATGGAAAAGGGTAGGGTTATTTCAGGTTTAGGCTTGGAGGTGAAATTATGTTTCGCTTTGCTTGTTGAGGTTCTAGATGTCAGTATGTCACTCCATGCCCTCCTCTCTGACAAAGATGGGGCCCAATATGACCGCAAACTCGCCTCGCATCGGTGGCCTGTCACTGGCATGATCTGGCGACTTTCTAGTCCTGCATCAGAGAGTCGTCCAACGGCAGTGCTCCGCAAACTATGGTTTGTGTACATTTGGTCATATTTGCCTCCTTCCATTATGAACTTCTCCACAATCCATGTAGAGATTCCAAAACTGGAATTTCAGGAGGAAAAGAAATGGATCTCAGCGTCATCAGTAGATACAACCAACGAGAAAAGTTCCCACAGTGTTGAGTCGGCGGCAGACGATTACGGCCAGGCCGGCTTTGATTCTGGTAGTGACAAGGAGAATTGCAGTTCGATCAACGTCTTATCACACGTCAAACATGCCCTAGATGAGGATTTAAAATCCCTTCTTTTTACCAGCAACACACCCAGCAATCAGGGCACTACGATGGTAGTCAAGAGTGTTGGTATCAGTTCCTCAAGAGAAAACAACCATGCAAACCGAGATTCGGGCAACTGCTCTGGCTCATCGGTTTTGTGTTTGGAATCGGCCACTGATGATTCTTCATTCCTAGAGCAGCTGAGCTGTGATCATTCCTGTCAATCCGACAAGAGGGAAAACTCCTTTATGAGTGAGTTTAACTTTCCCACTATTGATTCTTTGGAAGATGGATATCAGTGCTTCAACAGTGTTGTGAACCAGGGAAATGATGCAGATGTTTGTTTGAACCGTTCAGATGATGTTGATTCTGATGAAAATTTCATTGGGAATAATATCATCACTTGTAAAAATCCACCTAATCCTTCTCTGTTGCTCCATGATGGCAGCGTCACACCAAGTGATGATGGATATCAAGCTTTTGAAGGCTTAACAAAGAGCACAGAAGGACAGTGGAGCACGAGCACCAGAACCGAACAAGCTCTTGATGAATGTGGAGCGCTGAAATTCCCCCACAGCACTGGCCAAGATCCCACATCAAAAAGTTTGTGGGCCTCTTCTTTGCATTTCTCACCCATTATTCATATAGACACTTCCTATCAGTCTGTTTAGCTGTGCTGTACACAACTGAAACATTGAATTATCTTTGTATGTAATTTGTTGTTGTTCTGCATGAATCACCCATGAAACTATGACCAGTAATAACTATCTTTAAACCTTCAATTCAAGTTACACTTTTAACAATAAGAGGTTGTACAGTGTCTTAAATGCCTGAAGAGGACATGTATTACCATTTTGACATTATTCTGTATGATTTTATCGTCTTTGACATTGAGTAACTGTCACGGAGTCACAGCCAGCACCCACCAACACATCGTCACCAGATCTACACGCTCCACCCACTCGTTCACAATCTCTTGAATTCTAATCACCCACACCTGCACCTTATCCGACACACTATAAAGACTCTCACTCTCTGCACTTCAGTGTCTGGTCTCGTCTAACATACCTGGACTCCTTACCTGAGCATTTCGTATCCTCTTCCATCCACCTTCCTTCGTCTACTCTCCATTCCTCGTGGATCCTTCACCTGCAAAGAGACAATGACTGTTCCAAGTGACTGTTCCAAAGTGCCTGTTCATTTACTCACCTGCACTCTCTGTTTGGCAATGTCCGTGCCTCTGTCTCAATAAACCTGTTAATCACTAACCTGTCTGCCTCCGTCTGTCCTGACAGTAACATTTACTAATGTACATTTTAAATGCATTGTTATATTATTATTGCCATCTCAGTCTTTTTCTGTTTTTGCAAATAAATAAATAAATAAAATACATACCAAATGTAGGTGTGGGTGACACTTTAAATATGCCATAAATGCCCCCAGGCTTTTATTATCATCTGCCATTGATGATTACATTTTAACCAGAAACCCTGAGATATCAGCCGCATCAAAACTTCAGAAAATGAAAGAAAGAAAAAAGTGTTGGACATACATACCAAAATAACCAATTTTACCTACATTTTTTCTTCTTCAAAAAGTGAAAGCGAAAGGCTTCATCTTCATTCTTTCTCTCAGGCAGAGATTTAATTGAGAATATGCTAGCATAAGTCTCATTTCATTATAGTGATGTGAGATTCAGTGCTGTAGTAATAATTACTAAATTAAATAACTAAAATATTGACACAAATTATAAAAAAAGACTTACAAATAATATAAATATACTACAACCTAATGGTCAGTGAATATGTCCATGTAAATAGAA
>TU222580
GCCGCATCAAAACTTCAGAAAATGAAAGAAAGAAAAAAGTGTTGGACATACATACCAAAATAACCAATTTTACCTACATTTTTTCTTCTTCAAAAAGTGAAAGCGAAAGGCTTCATCTTCATTCTTTCTCTCAGGCAGAGATTTAATTGAGAATATGCTAGCATAAGTCTCATTTCATTATAGTGATGTGAGATTCAGTGCTGTAGTAATAATTACTAAATTAAATAACTAAAATATTGACACAAATTATAAAAAAAGACTTACAAATAATATAAATATACTACAACCTAATGGTCAGTGAATATGTCCATGTAAATAGAAATAAACAGACATGAACACATTTAGTTTTTCTTTATTGAAATGTGTTAAAAACATCAAATAAACAAAAAAATGTTGATGGTCAATTACCAAAATTCAAAAATCAGACTTTTGCACAAAGAGGCTGAATCTAAAAACAAATACTTTTAATATGACACATAAATTATTGCATATCTGCATTGTAATGAAATGTAGGTTTTTGGTTGACTAGTGTGTAGCACAAATGTAAAAAGACATGATGTAATGTCATCCAAAGATGCACGACCATTTTGTGAAAGCTTTTTGACACATTAAAAACATCAAATACAGCGTGAACTACATTACACCTGTAAAGATAACATCCCAAAAGCCTTCTGCAGCATGTATAACAAGGTATGTGTTTGTGTAATGTTCAGCACATTTTATTCATTGTAAAATGTAATGTAAAACTTGCTTCAGTCATTATTATTATTATTATTAAAGGCAATTAAATCTTAAAGGAGCCAGACTTACTAAACTGGTTCTAGAACATTTATTCTCATATAACTTTATACCTATAGCTATTACTTAATATAATATTGGTTTACAACAAAAAGCATCTTTGTGTTGTATGAAGATCTACATAGTCAAGAAGACTTGTTTCTTTAAGACCTTTGCGTAAAGATTCTTGTTTAAACCAGTTCTGCCTGTCTTGTGACAAAGTTCTCAAGCCAAATGAGTGTGGGTTATACTTTCGTTATCTCAACCAGCTTATCTGGTATGTTTTTCTTGTGATGACCACACAGTTAAAGTTCAAAGAATGTTTCACAATAAAAACACAGAGGGTATATACAGTATAAAATCATTTTAAAGAAGAAATCTGAAAGCAGATTGATGTCATATTCAGAGCTATAAAAATCACACAGCAGGACCCTGAGAGAAATGCTTTCTTAACTCAACTGAAATGATACAGCTCCTCTTTGTGTGGAATTTCCATTTCCTATATATAAATATATATCAGGGTCAGAAATTAACTTTTCCAGGGGCAATATTTGCCCCAGGGCCACTTTTTACATTTGTAAGGACAATTTTTATAATTACCTTAATAAATGTGTCTGTGTTGTTGTTTTTTTATTTTAGATACTTAAATTTAACCAGTTTCTTTAAATCAATCACAATAATGATTGTTTCTATGTTGATATTAGTAATGCTGATTAATAGAAAGCAAGCCACATTCTGGCTATACAGACGAAACAAGCTAAGAACCGTTTTTTACAGATTAGAAAATCAAGACTTCACATTGGTTATTTCAGTAGCAAAAAACTAATTATTTAAACTGGGAATAATTAAATTACATAAAGAAA

Function

NR:

description
IL-4RA-like protein 1 membrane anchored form

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_01963803_01965901.mRNA False 2464 mRNA 0.40 3 1963555 1967052
TU222580 True 1640 lncRNA 0.30 1 1966732 1968371

Neighbor

gene id symbol gene type direction distance location
CI01000046_01933932_01935589 NA coding upstream 25733 1932890 ~ 1937822 (+)
CI01000046_01903950_01922429 KDM8 coding upstream 41116 1902090 ~ 1922439 (+)
CI01000046_01865451_01881353 NA coding upstream 82186 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 coding upstream 295543 1539494 ~ 1668012 (+)
CI01000046_01318513_01343464 USP31 coding upstream 619360 1316670 ~ 1344195 (+)
CI01000046_01988070_01995034 UBFD1 coding downstream 19268 1986320 ~ 1995330 (+)
CI01000046_02006028_02024639 NA coding downstream 38976 2006028 ~ 2024940 (+)
CI01000046_02027256_02031337 RMI2 coding downstream 60102 2027154 ~ 2031451 (+)
CI01000046_02037519_02037782 SNN, CP075, SNN.S, SNN.L coding downstream 70467 2037421 ~ 2039716 (+)
CI01000046_02066859_02072868 NA coding downstream 99807 2066859 ~ 2073014 (+)
G196051 NA non-coding upstream 1023 1962246 ~ 1962532 (+)
G196050 NA non-coding upstream 1796 1961219 ~ 1961759 (+)
G196038 NA non-coding upstream 92575 1870698 ~ 1870980 (+)
G196035 NA non-coding upstream 96748 1866504 ~ 1866807 (+)
G195978 NA non-coding downstream 30071 1997123 ~ 1999094 (+)
G195981 NA non-coding downstream 89018 2056070 ~ 2057016 (+)
G196076 NA non-coding downstream 111070 2078122 ~ 2078480 (+)
G196080 NA non-coding downstream 115633 2082685 ~ 2083646 (+)
G195003 NA other upstream 801865 1161157 ~ 1161690 (+)
G194721 NA other upstream 1503210 458008 ~ 460345 (+)
CI01000046_02451052_02454565 MAFK other downstream 472865 2442395 ~ 2457280 (+)
G196936 NA other downstream 1219943 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1976776 3943794 ~ 3945500 (+)
G197055 NA other downstream 2182371 4149423 ~ 4149780 (+)
G197121 NA other downstream 2403959 4371011 ~ 4371430 (+)

Expression


Co-expression Network