CI01000046_02006028_02024639


Basic Information

Item Value
gene id CI01000046_02006028_02024639
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2006028 ~ 2024940 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_02006028_02024639.mRNA
GGGTTTCGGTGTGAAAATGGCACACTTTCAGCTTTCTGTGCTCTTTGGTTTAGTGTGTGGTGGACTTTCAAAATGTTCTCAAATACAACGCTCAACAACATCCTCACCTGTTCAGCTATACAACTTTCAGACTCGTCGCAGGGGAATGTCAATAATCTCAAAGCATTTACTGACTCTTCCTTTGATTTGTACACATTGCTGAGATCTAGACTTGACATTGGTCTTGTCGCGAGATCCATCAATAACGTCAGGTCAAACGGCTCAATAGCGGGAACCCTGAGTGATGCGGATTTTGCAAGCCTCTGGTTTCAAGTGAAGCTCAGTCCATACCTGTCCTCACTGTCCGGAGAGACGCTCTCCTGCCTGAGTCAAAGCAGCCTCACCTGCCAGAGCTTCCAAGCACTGCTAAACAATCTAAGCTCGCAAATCGGCACTGAAAGACAAAGGATGGTGTATCAGAACTTCATAAAACCTTTTCTGGCGAAATATACAGCTACCGGTGCTGTATTTTGTGCACCTGACTTTAATTGGACAAATGTCAGTACAAATCTCAGAACCAAAACCATAAATCTTCTGATATCACAGAATGGAGAGAGTCTGGCGAAAACGATTAAATGTGTTGCTCAATCAAATATGAGCTTCACTGAGGAAAACCTGCGACTTTTGATTACTGAATTCTCCAGACCACTGCAGACACAGATAGAGCAATCCGTAATGAACTCATCTCAGAGCAACCTCACAGCCTTGTTTGCAGAACTGCCCGCTGAAAGCTTCACGTCTGGAAATCTTGATGATGTGGAGTTCATGAGATTCTGGTTCCAAATCAAGATGAAGCCTCTGCTGCCCAACGTTTCGAAAGAATTCCTGTCTTGTCTCCGCACACGCAACTTCAGCTGTCGGGCCTACAAGGCTCTTTTTGAGGGACTAAATAATAATACTGGACTGATGGACAATGTGAGACAGAGATGGATCCTCAATGACTTCATTGTTCCTTTCTTGTCACAACGTCAAAGCACAGGTGTCGATTGCACGTTGCCATTTATCAGCAGTTCGGACTTCATCCAGCAAAACTTTGGCAATTACTTTCAGCTTGCACAGCTTCAAGTTGTTTCAAACTTGAACCGCAATTTTTCAGCTCTGGACGTGCTTCCTGTTCTCACATTGGTGCAACTGGATGAACTGGTGTTCGGTAATGCTTCGGCAGCAGACCGAACGAACATCCTCACAAGAGTCTTTGACTTCCTTCTTCAAAACGCTAGCAAAAACACAGTAGACAGCTTCCTCCGCTCTCTTCAGACACAGGCCAGAAAGGCAAACTTCACTTGTGAAAACTACAAAACTATCTTTGACAGGATCGATCGGGCATTACCACCAGTCCCTTCTAACCAGTCTGAAGCCCTGCTGACAATCAGAGACTTAGTGATGATGATTCCTCCCGATGAGTGCATTGAGAGAGCGAGTCAATGCACAACAACTCCTTTGAATGAGTTCCTCTGTACAAGTGTCAACAGCTCGGCTTTGGATCGGTTCTTGAGAGCAGCTCCAAATGCAACAGGCCCACTGAATCTTTGTAACTTCACTGTGTTGGAGTTTGCCTGTCTACCAACGGTGTCACAGTTAAACTCTCAACAAGTGGCCGATGTGTTGGCTTGCAAACAGCCCAGCAATGTGGGAAAAGAGACCTGGAAGCTTTTCTTCACCAAAACCAGCACAGTCCTTGATGATGCACTGCTAAAATTTTCCAACATGACTCCCAGTCCCAGCAATGTGTCTTGGTCTGATGTTCTGGATGTGCTTGTTGACGTCCGGGTCGATCGCTTTAGTCGCCAGAGACTGAGTGATCCTGGCTTCATTCGCTCATGGTTTCAGGGTCGACTGAAGCCCTTCTTACCATCAGTATCTCAAAGAGTCCTGTCCTGTCTCAGCCACAAAAACCTCACCTGTGACAGTTACCGCATAATCACTGAGGCTTTTGTGAATGCACCTTTACGAGATGGGCAAGATGTTTGCCTTCCACTGCAACCCAATGCCACTCAAAGACAGGATCTGATCTACACAGAATTCATGAAAGCTTTCCTCTCTCGCAATGACACTGACGATCCCAGCTGCCTTAGAAATACAACCAACAGCATGCAGTGGATCAACAGAAACTTTGGGCCGTTCGTTCAGTCAGCTCCGCTAACAGATCTTGTGGCACTGAACAGAAACTTCACAGCGGTGGATGTTCTACCTCTTTTGGCTCTACAACAACTAGTCGAGTTTTCAGCCTCTCCTGGTGCACTAACAGGTCCTCAAAACGTCAGCAATGTCATGCAATTTGTTAAGAATTGCCAGCTTCCTGATTTCTTTGACCGCTTTTTCCTGAAACTGCAGGTTAACCTCACACAAGATGTAAAAGCAGCACTGATAAAGCAGATATTTGACAGAGTCAACCTGTCTAATCAAACTATCCCTGATCAGGAAGTTGATTTCTGGTTCCAGAATAGAATAAAACCTCTGTTAGCCAACCTTTCAGAAAGCATTGTGTCTCCATTGTTCAGCATCCTCAGCACAAGGAACTGCAATATCACTCAAACCGCACTGCAGCTATTAGACGCTGTTCGATCTTCAGTAGCAACAAATACCAAAAATGCGATCTACAATAGCATTATTCAGTCCTTAAAAGGGTCACAGCCTCTGAGGTGCTACAGAAACAACAGCTTCATCACGTTCCTAAACGAAAGCCTGTTCGGCTTTGGGCCACTTCCAAATCTGACCACCTTCCTCTCTCTGATGCCACAACCTCGGAGATCTGAGCTTGTAAACTCTATATCTCTTTCTGAACTGGGAAGCTACTTCACACAGCCGGAAGTGGTGGACAGTAATTCACAAATCTGTGTCATCTTTAACAACTTTAACAGAACCCCTGACTTCTTGGAAACCGTAGAGGTTCCAGATAATGTTAAAAGCAGCATCCTTCCCTGTGTCTGGCCTCTGGCACTGAAAACAGACAATCAGACGGAGATTGATTTGTGGTTTGACCGTAGATTGAGGCTTTACTTGAAGTTCCTGAACAAAGATATATTAGGGTCACAAGAAACACTGAGTGCATCCTGCCTGTCATACAGGAAAATGGTCAATGTTTTAGGCAACAATTTCACCTTTAATGGTTCTAAGATTTCCAGTGAAGATGTGTACACCACCATCAAGACATATCTGAAAGCAGACACTGCTCCAAAATGCTACAACTCCTTTGACCCTAATCTTAACTCAACTGCGTGGTTCGTTAACAACATTGGTATGTTTATAACTTTTATGAGTCTGGACGATCTCTACTCTTTCGGCCCTGAGAAGACGGTACAAATCTTCACTGTGAACCCTGAAAACATAAAACTGTTCAGTCAAAAGACAATTCCGAGGAACGTGCTCAACCGCTACACTGAACTCATCTTTCGACAAAACGTCAACTTTAATCTGTTTGACCTGCCATCAGTTTTGCAGTGTGACGCCCCAGTATCAACTTTCACAAAACTAAATGAGACTCAAACTAATGTTATTCTTGTAAACTTTAATTCATCTTGCTCCAATGTGGATCCTGCAATATCTACAGCCCTTGCAGGAAACATCAAAGTCATAAATGCTGAAGCTATCACCAGCTTGGGAAATAAAGTCGTTGGCTTAACAACTACACAAATAACCTCAGCATCTGCATCGGTTCTTTTCAGTGGGCTCTCAACACTGAGCGCTGTGTCTGGATGGAGCCTCGGACAAGCCAAGGCTGTCATAAACGTGCTTATCAAGGACTATCAGTTCACCAATTCCAGCAGTTTGCTGAATCTTGGATCCCTGATTGGAGGGATGCCTTCAACAATACTGACAACCATTCAGCCGGCAGAAATTGTTACCACATTAAAAAGTACAGTATTTGTACAAAACATACTGGCTGCCCCAGAAATTGTTCAGAAGACCTTTGTGACCCAGGTAATCAAATTGAGTTCGTCACCAGCTGACCTAATGACAAACGTTCCCAATGAAATGGCTGTTCAAATTCCAAGAAACTTTCTGAGGAATTTCACCAATTTAAATGTAGATGTTGTGAAACAGTTGAACAATAAAAAATGGAAAACTGAACAGCTGACTTGCATGTACAACCTGGTGAGAAAGGAATCACCTGTGGATTTTGAAAGCTATCATCCAGATATGTTGCTGTACTACAATTATGGAGCAATCAACAAAACCATCTGCCAGGCATATTTTACTCAGGTCGGAGCAGCAGATCTCTCAATCTTTTCAAGCACGCTGAGAGGAAGAAGGGACATCTTGTGGAGCAAATATATAGATTGCTTTGGCATTTCTGGAACAAGCATCCCGAAACAGAATTTGGCAGTGCTGGGCAACTTGGCATGTGCTGCAAACAGTGACTTCATTACAAACTCAGACCCAGAAATCCTTGAGAACTTGAAGAGCTGCAGCGATCTCTCAGATGGGCAAATATCAGCCATGGAAACTGTTCTTATCAAGGGAACTCCAAAATATGGGCAAGTTATGATTGTATTATTTAGACCAACAAGCAACTGGAATCAGAAAACACTTAGTGATCTGGGAATTCTGCCTTTGTACTTCTCACAAAACTTTTGGAGTAAATTCAACCAGAATGATTTACGCAAGTTCTTGAAAACCTTCTTGAAATCGATGCGTGAACGAAACACACCAAAACCACAACTGAAAAAGCTGTTTAAAGCAATCATTTTGCCCACAGTAGCCAAGAGAGCAACGGGTACCTGTTCCAAGGACATGATCACTAGTGTTATCATCAACGATGACGCCTTCCCCTTTGGATATGATGAGTCGCAGTTCAGGTACTGTCTGAGTACTGATGTAGTGAGGGACAACCTTGCTAGCCTGTGTGAAAAAATTGAGGATAGCGCCTTCCAGAGAGTCATTCTGGACAAACTCAATGAGATACTTCCAAACGGCCTTTCAGAGGATCAGGTCCAGTTGCTGAAGTCAGTGTCCAGGAACGCAACAGCAGATGAAATAAGCAAATGGAACATCACTAAAACCGACACACTGGCTGCACTGATGAATGCCAACGATGGCGAATGGTCCTCTGCACAGAGCAAACAAATCATTACCAAATATTTAAGCGCTAACAATAACCTGACCGCCACTGAGCTGACTATAGTGAAAGGACCAAATCTCTGCTCTCTGAATAACAGCACATTGTCAACAATCTTGCCTGAAAGCATACGGGATACCGATGCTTTGAATGTGTCAAAATGTTCATCTGACAACAAGAAGGCACTCTTCACCATCGCTAACAAAGCATTTCCCTTGCCATCTGTCAGAGCCCTGAGTGACGTTCTGTCAGCTTACCAGCTCATTGAACCCTATCTTGGAGGTGCAGATCTAAATTACATTAGGAATCTGTCATTATATAATGTCAGCATGAGCCTGGCCACTTTCATAAGTCTGGATCCAAGCGTGATTGCGAGCCTCACTGTGCAGGATGTCGTGGGTCTTCTTGGTAGCAATTTGCAGGATCTGAAAACATTTGAAAATGAGACGGTCGTGCGGACCTGGCTCTCACTGCAGCCTCAATCAGAACTGGATAAACTGAGTCTCAATCTGTCTGGAGGAAAAGCAGACTCAACAACTGCTGTCCCGACAACTAACCCGACTGTGAAGGCTACGGTTGCTACCAATGCAGCCGCTCCAGGAATTGGATGCAGTGGATGGTCAGTTTCACTCGGCATACTTGTGCTCATTTTTACCATCATCAAAGTGGAGATTATATAGCGGTACTGACCCCAAATCAGCCACACAGTAATTTTACCAAATAATGTATCTGTGAGACTCTCCAGTACACAAAATATAATATATAGAATTATTACAATCTAATTAATCTGTCTGTAATCACATATTTTCTTTGTTTGACATTTGTCTAATTCTGTCATTCATCCTATTCATAATTATCATATATATATATATATATATATATATACTGTAATTGACATATGGAAAGAGTAATTTATACTAATAGTCAAAGCAAGGAATGTACAGTATTTTGATTGATATACTTGTACAACTGTCTTAAACA

Function

NR:

description
Mesothelin-like protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_02006028_02024639.mRNA True 6079 mRNA 0.43 46 2006028 2024940

Neighbor

gene id symbol gene type direction distance location
CI01000046_01988070_01995034 UBFD1 coding upstream 10698 1986320 ~ 1995330 (+)
CI01000046_01963803_01965901 NA coding upstream 38976 1963555 ~ 1968371 (+)
CI01000046_01933932_01935589 NA coding upstream 68206 1932890 ~ 1937822 (+)
CI01000046_01903950_01922429 KDM8 coding upstream 83589 1902090 ~ 1922439 (+)
CI01000046_01865451_01881353 NA coding upstream 124659 1865451 ~ 1881369 (+)
CI01000046_02027256_02031337 RMI2 coding downstream 2214 2027154 ~ 2031451 (+)
CI01000046_02037519_02037782 SNN, CP075, SNN.S, SNN.L coding downstream 12579 2037421 ~ 2039716 (+)
CI01000046_02066859_02072868 NA coding downstream 41919 2066859 ~ 2073014 (+)
CI01000046_02123765_02158243 AXIN1 coding downstream 98825 2123765 ~ 2158243 (+)
CI01000046_02264732_02268319 UNCX coding downstream 239632 2264572 ~ 2268638 (+)
G195978 NA non-coding upstream 6934 1997123 ~ 1999094 (+)
G196051 NA non-coding upstream 43496 1962246 ~ 1962532 (+)
G196050 NA non-coding upstream 44269 1961219 ~ 1961759 (+)
G195981 NA non-coding downstream 31130 2056070 ~ 2057016 (+)
G196076 NA non-coding downstream 53182 2078122 ~ 2078480 (+)
G196080 NA non-coding downstream 57745 2082685 ~ 2083646 (+)
G196085 NA non-coding downstream 61869 2086809 ~ 2087131 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 442691 1539494 ~ 1668012 (+)
G195003 NA other upstream 844338 1161157 ~ 1161690 (+)
G194721 NA other upstream 1545683 458008 ~ 460345 (+)
CI01000046_02451052_02454565 MAFK other downstream 414977 2442395 ~ 2457280 (+)
G196936 NA other downstream 1162055 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1918888 3943794 ~ 3945500 (+)
G197055 NA other downstream 2124483 4149423 ~ 4149780 (+)
G197121 NA other downstream 2346071 4371011 ~ 4371430 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026701 mslna coding NC_007114.7 CM002887.2 43835558 ~ 43872889 (-)