CI01000046_02037519_02037782 (SNN, CP075, SNN.S, SNN.L)


Basic Information

Item Value
gene id CI01000046_02037519_02037782
gene name SNN, CP075, SNN.S, SNN.L
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2037421 ~ 2039716 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_02037519_02037782.mRNA
ATGTCCATCATGGATCATAGCCCCACCACCGGGGTCGTCACCATTATTGTAATACTCATTGCCGTTGCCGCACTGGGGGCTTTAATTCTTGGTTGTTGGTGCTATTTGCGGCTGCAGCGCATCAGTCAGTCTGAAGATGAGGAAAGCATCGTCGGAGAAGGTGAAACCAAGGAGCCCTTCCTGCTGGTCCAGTATTCGGCCAGAGGCCCACGGGTGGAGCACAAGACCAAGCTCACTCCTAACGGCAACGAGAGCCACACCTAATTCTGCCTTCGCAATGCATACAATGTAGTGGGGCGTCCGTCAGATATCTCCCTTACAATATCACTCAACACTGAAATGAATCCACTCTGCATTTTAAACAAGGTGATAAATGAAGGCGAACCTAGTGCATGCAGTTGTCTAGTTGCTTTGACTGTTGATTTTTTTTCGGCCATTTTGTGGTGGTAGAGCCCTGTTATAATGTGAAATCGATGACTGTAAGCGTTTTGTGCAATGCTGTTTGTTTGTAAAGTTGTAGCTGAGTTCTGAAGCTAAATCAAGACTCATTCTGTTTATTTGGTTGTATTTTTACTTTACTGTTTCATCCAGAGCTGGCTCTGGTATTAAGAAATTCAGCACACATTTCAATGGACTGATGTCAAAGCTTTTGAGGCTTTTTATCCAATTCATTCCTTTTTTTTTCAGGAAGATATTTCAGAATTCCCATAGAAATGCTTTATTGAATTGCAATACAAAAAGGAACATTTTCATTACAAAGAAGCACTTCAGGATACCATAACTTGCCAAATTATGTAAACTAGCTTTTATAAGCTCTTACATTATGTTCATGGGATCATGATTTCATTAGCACTTTTTATCTTTCATGTGGTGTACAAGTGATTTTATATCAGCTGGTTCCGGTCTAAAACTGCTAGGAAACCACTAAAAACAACGAAAGCCAATGAGTGAGGTCTTTTTTATTCTTGTTGAATACTGTTGTGGCCTCTGAGGCGTTCGTTTTTTTGTGGTTGAGCACATTTCTACATAGCGAGAGGTCATTTGAAAGTGTAAATATCATTTTTATAGATGGCTGGATGCACAGCTGGATACTGAAAAGTCATTGTCTTAAGTTTTTAACCTGTTTCTTCACAGTATTATTTAATTCCACATATTTTTGTGATAACGTGATGTTTGCTGTTTGTACATGCGAGATGAAAGAGAGAAATGATTTATTTTTATACAATATTCATGCAAATGTCAGTCAGGCATTTAGAGAGAAAGATGAAGCCTGAAAAAGCAGCTAATATGATTTAATTGATGTTACTAATTACAAATCTTTAGGGTTCTGTCACACATTTGAAGTCGACAGATTTTTTTCTGAATTATGTGCTGTTCAATATACAGGAAAAGAAAAACAAGGAGGACAGTACATGCATGTTCATTTAATCTGCATATTTGAGGAAAAAAAAGCTACTTTTTAATCAGTTAAGCGCTCAGTATATTGCTTATGTCACTCCAGCCAGTGTGTCTGTCCAGTGTTTGACTGTACTGAACA

Function

symbol description
snn Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Orthologous to human SNN (stannin).

GO:

id name namespace
GO:0009628 response to abiotic stimulus biological_process

KEGG:

id description
K15365 RMI2; RecQ-mediated genome instability protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_02037519_02037782.mRNA False 1537 mRNA 0.38 1 2037519 2039055

Neighbor

gene id symbol gene type direction distance location
CI01000046_02027256_02031337 RMI2 coding upstream 6068 2027154 ~ 2031451 (+)
CI01000046_02006028_02024639 NA coding upstream 12579 2006028 ~ 2024940 (+)
CI01000046_01988070_01995034 UBFD1 coding upstream 42189 1986320 ~ 1995330 (+)
CI01000046_01963803_01965901 NA coding upstream 70467 1963555 ~ 1968371 (+)
CI01000046_01933932_01935589 NA coding upstream 99697 1932890 ~ 1937822 (+)
CI01000046_02066859_02072868 NA coding downstream 27804 2066859 ~ 2073014 (+)
CI01000046_02123765_02158243 AXIN1 coding downstream 84710 2123765 ~ 2158243 (+)
CI01000046_02264732_02268319 UNCX coding downstream 225517 2264572 ~ 2268638 (+)
CI01000046_02335530_02348525 NA coding downstream 294919 2333974 ~ 2348945 (+)
CI01000046_02356713_02359204 NA coding downstream 317599 2356654 ~ 2360009 (+)
G195978 NA non-coding upstream 38425 1997123 ~ 1999094 (+)
G196051 NA non-coding upstream 74987 1962246 ~ 1962532 (+)
G196050 NA non-coding upstream 75760 1961219 ~ 1961759 (+)
CI01000046_01865451_01881353 NA non-coding upstream 78371 1865451 ~ 1881369 (+)
G195981 NA non-coding downstream 17015 2056070 ~ 2057016 (+)
G196076 NA non-coding downstream 39067 2078122 ~ 2078480 (+)
G196080 NA non-coding downstream 43630 2082685 ~ 2083646 (+)
G196085 NA non-coding downstream 47754 2086809 ~ 2087131 (+)
G196086 NA non-coding downstream 48224 2087279 ~ 2087514 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 474182 1539494 ~ 1668012 (+)
G195003 NA other upstream 875829 1161157 ~ 1161690 (+)
G194721 NA other upstream 1577174 458008 ~ 460345 (+)
CI01000046_02451052_02454565 MAFK other downstream 400862 2442395 ~ 2457280 (+)
G196936 NA other downstream 1147940 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1904773 3943794 ~ 3945500 (+)
G197055 NA other downstream 2110368 4149423 ~ 4149780 (+)
G197121 NA other downstream 2331956 4371011 ~ 4371430 (+)

Expression


Co-expression Network