CI01000046_02264732_02268319 (UNCX)


Basic Information

Item Value
gene id CI01000046_02264732_02268319
gene name UNCX
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2264572 ~ 2268638 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_02264732_02268319.mRNA
AAATAAAAATAGTGGTTCGGTCAATTTGACAGCAGTGCACTACAATCTTACCTGTTCACATGGCAACATTTCGACTTGACGAATCGGTACGGTGTGTGTTTTTTCCCCCCCGTTTTCTTTTCTTTTTTGTGTGTTTGTTTGTGTGTGCAAAAGAGTCGAAATGAATAGAGGGACATTGTCTCAAACGGTGGTGAATCCGCCGCTCTGTGTGGCTGCAGTCCGAGAGCCTAAGCTAATTATTGGAAGCTTCGTGTTGATAAAGAACAGCTCATCCTACTCTCCACATCATGTCCCCTCCTCGCTGGCCACTCTCGCTGCATGTTTTTTAAATTCACATCACCAACCACCAGACGTCGTTTCCTTTTGCCTGGGAGATGATGGACAGCAGGATACTGGATCCACCTCATGCCCAGTTCGGAGGCTCGCTCGGTGGGATGACGGATTACTTAACGGCTCCTGCACGGCTTCTGTGGTGAATTCTAACCCCCTCTTGTCGTCTGGCTGCGGTATGAATGGAGATAACCAACAGTACAAACTGACAGATTCGGGGGATCCAGAGAAGGATAGCCCGGGTTGTAAAAGAAGACGAACTCGTACCAATTTCACTGGCTGGCAGCTGGAAGAATTAGAAAAGGCTTTTAATGAAAGTCACTATCCAGATGTGTTCATGAGGGAAGCACTTGCTCTGAGATTGGATTTGATAGAATCGAGGGTGCAGGTATGGTTTCAAAACCGAAGGGCGAAATGGAGAAAAAAGGAGAACACGAAGAAAGGGCCGGGGCGACCTGCACACAACTCTCATCCGACGACCTGCAGTGGCGAGCCAATGGACCCAGAGGAAATTGCTCGCAGAGAACTGGAGAGGCTGGAGAAAAAGAAAAGGAAACAAGAAAGAAGGCTTTTAAAGTCCCAGAACAAACTCATTCCCGGAGACTTATTTCACACCCCAGGATCTGACAGTGACAGTGGCTTGTCACAAGTAACGGACAGTGAACAAAGCATCCATTGCGACATGGGCAGAAACCAAACGCAACCAAGCTGTGACCAAACACCACAGAAACTCCAGAACCAAAGAAACGCAGACCAAGACGCGAGTGGATCCGAGCTGGACTCGTCCGACAGCGGTCAGCAGTCAAACCTGATGTGCTCCAACAGTAGGTCTTCCACTCTTCAAAAACTCAATCCCTTTAGCGTGGAAAGCCTTCTGTCGGACTCCAGGCCGAGGCGCAAGCCGCCAATGGACTTCCCAGTACCGACACCACGGCCTTTGATAGGGAAAGGACATTTTTTACTGTACCCTATTACACAACCTCTCGGTTTCATTGTTCCACAGACTGCTTTGAAGAGCACAGCACCAGGTCCTGATGCTGAAAATGGCCAGAAAGGGCCAGCTACTGACAGTTCCTTTGCTGGAAACCTAGGACACAGGAACGCCAAGGACAACAGTGTAAACAACAGCGGCGCGCGAGCAATCAAAGGCCAGGTCAGTCAGTCGGGTAACATAACGTGTTCACCACAGAGCAGTTCACCACAGACTACCATTAATGGTCACTCGGCGGGCAGCTGTAACGATAGATGCCCACAAGACATAGAGTTAGACCTCGTCGATCCAAAGTCTCCACAGTCGGAGAAAAAGGAGCAGTCGTTACCTGACTATCCACCACAAAATTCAGAATCAGCGACAACCAACAAGGACACCGACAAAGACTCAGTTGACGTCGATATGGAATAAATGAAATCATAGTAGAAACTGAGGAGTGTGTCGATGTCGCACGACACTTCTCCGCAGATTAAGCGAAGAGGAAAAAAAGTCGACATATCGAAACGTATCGTTTTCACTGACATATTTATATTCTGATTAGGGGAAATATCTGTGTGAATAATTTGTGTATGTGTGTGGTGGGCTATCAAATGTTTATTGAACAAATAGCAGCAGCTCCCTGTATAAGAAACTGTATAAAAAAAAAAATACCAAGACAAAACCTCAAACGTTGTACAAAGTATTAAGATATTTATATATGTAAGTTTTTTTTTTTTTTTTTTTTTTATAA

Function

symbol description
uncx Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including brain; forebrain neural rod; olfactory placode; segmental plate; and spinal cord neural tube. Orthologous to human UNCX (UNC homeobox).

NR:

description
Uncx4.1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K09328 UNC4; homeobox protein Unc-4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_02264732_02268319.mRNA True 2051 mRNA 0.46 5 2264572 2268638

Neighbor

gene id symbol gene type direction distance location
CI01000046_02123765_02158243 AXIN1 coding upstream 106329 2123765 ~ 2158243 (+)
CI01000046_02066859_02072868 NA coding upstream 191558 2066859 ~ 2073014 (+)
CI01000046_02037519_02037782 SNN, CP075, SNN.S, SNN.L coding upstream 225517 2037421 ~ 2039716 (+)
CI01000046_02027256_02031337 RMI2 coding upstream 233121 2027154 ~ 2031451 (+)
CI01000046_02006028_02024639 NA coding upstream 239632 2006028 ~ 2024940 (+)
CI01000046_02335530_02348525 NA coding downstream 65336 2333974 ~ 2348945 (+)
CI01000046_02356713_02359204 NA coding downstream 88016 2356654 ~ 2360009 (+)
CI01000046_02365658_02365816 NA coding downstream 97020 2365658 ~ 2366186 (+)
CI01000046_02451052_02454565 MAFK coding downstream 182414 2442395 ~ 2457280 (+)
CI01000046_02616123_02661535 NA coding downstream 347409 2616047 ~ 2661964 (+)
G196156 NA non-coding upstream 510 2263831 ~ 2264062 (+)
G196155 NA non-coding upstream 1197 2263141 ~ 2263375 (+)
G196154 NA non-coding upstream 2090 2262248 ~ 2262482 (+)
G196147 NA non-coding upstream 8943 2255395 ~ 2255629 (+)
G196141 NA non-coding upstream 38432 2224506 ~ 2226140 (+)
G196164 NA non-coding downstream 14900 2283538 ~ 2283766 (+)
G196176 NA non-coding downstream 32788 2301426 ~ 2301796 (+)
G196177 NA non-coding downstream 33217 2301855 ~ 2302078 (+)
G196119 NA non-coding downstream 41182 2309820 ~ 2649187 (+)
G196209 NA non-coding downstream 117112 2385750 ~ 2386244 (+)
CI01000046_01865451_01881353 NA other upstream 305424 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 701235 1539494 ~ 1668012 (+)
G195003 NA other upstream 1102882 1161157 ~ 1161690 (+)
G194721 NA other upstream 1804227 458008 ~ 460345 (+)
G196936 NA other downstream 918357 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1675190 3943794 ~ 3945500 (+)
G197055 NA other downstream 1880785 4149423 ~ 4149780 (+)
G197121 NA other downstream 2102373 4371011 ~ 4371430 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026697 uncx coding NC_007114.7 CM002887.2 43352556 ~ 43356082 (-)