CI01000046_02674254_02676647 (ELFN1, ELFN1A)


Basic Information

Item Value
gene id CI01000046_02674254_02676647
gene name ELFN1, ELFN1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2674060 ~ 2676801 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_02674254_02676647.mRNA
GTTTAAAAAGGGGCTGACATATTAGTGCAGAAACACCCAACTCATGTGAAAAAATTCTCTGGACCAGAGACTGGACATTTTTGTCCCTTGACTAAAGGGAAAGGGTTTATTACCCTGCTCAAATACTGTGAGGCTCCATCCAGCCTAGTTTAAACTCAAGTGTTACCCCAAGCTGCTACCAACTGGCATCGCTCATGGCTTCCAGGAGGGCATCAGGAGCTTGTAATGGAGGCATGATGAAGAGTGCCTTCTTCTTGTCAGTGGCCATAATCTATCTGACTCACATAGGTGGAGTGAGGGGGGATTGCTGGCTCATAGAAGGCGAAAAGGGCTTTGTATGGCTGGCCATTTGCAGCCAAAACCAGCCACCCTATGAGGCCATCCCTCAGCATATCAACAGCACCATAGTGGACCTTCGTTTGAATGAGAACAAGATCAAGAGCATCCACTACTCTGCCCTCAGCCGCTTTACCAACCTCACATACCTGAATCTGACCAAGAATGAGATTAATTACATTGAGGACGGGGCTTTTTCAGCCCAGTTCAATTTGCAGGTTCTCCAGTTGGGCTTCAATAAGTTGCGTAACTTGACTGAAGGTATTCTCAGGGGTTTGGGCAAGCTGCAGTACCTCTACCTCCAGGCCAACCTGATTGAGACTGTGACACCCAATGCCTTTTGGGAGTGCCCAAACATAGAAAACATTGACCTTTCCATGAACCGCATCCAGGTGCTAGATGGGTCCACCTTTACCAGCCTGACTAAGCTGACCACCTGTGAACTCTACACCAACCCTTTCAACTGCTCTTGTGAGCTCTTGGGGTTCCTTAAGTGGCTCTCGGTCTTTCCCAACAGGACAAGTGAACGGATGGTGTGTGATTCTCCTCTAGGATTCTCGGGCTACAGTCTCTTAAGCCAGAATCCGAACAATCCCACATACCGGAATGCTCTGCATATGCTGTCCACTGTGTGCACGGAGGACTACGTGACTCCGTACATCCCTGTGCCTCCCGAGACCACCACTTTCCCTCCGGACTCAACACCGTGTGGGCTGGAAGACTGTCCTTCAGGGACTGAGCCGGAGGAAATCAGCATCAGTCCTACGTACATAGACTTAGATGTGAAACCAATCATGAAACTCAAGCAAGTGTCTCACACGAATGCAGTAATCACTGTTCAGATCCCTTACCCCTACAAGAAGATGTACATACTTGTCCTATATAACAACAGCTTCTTCACTGACATACAGAATCTGAAGCGGCAGAAGGAGGACATTGAACTGAAAAACCTGAAACCCCACACTGATTATACCTACTGTGTGGCTTCCATAAGAAACTCGTTGCGTTTCAATCATACTTGTCTGACACTATCCACTGGGCTTAGGAATGGAAAAGAGCGAGTAGCTAGTATTCCATCAGCCACCCACTACATAATGACTATCTTAGGATGTCTTTTTAGTATGGTTATTGTTTTAGGGATTGTGTATTATTGCTTGCGAAAAAAGAGACAACAAGATGAAAAGCACAAGAAGGCAGGTAGTTTAAAGAAGAACATAATTGAGCTTAAATATGGTGGTGAACTGGAGGGCGGAACAATATCCAGGATGTCTCAAAAGCAAATGATGTCTGGGGAGAGCATGACCCGCATGCCCTATCTACCCTCTGGCAGTGAAATGGAGCAATACAAACTGCAAGACATCAGCGAAACTCCGAAAATGGCCAAAGGGAATTACATGGAAGTGAGAACAGGGGAGCACCAAGATCGAAGGGAATGTGAGATGTCCATGCCTGGCAACAGCCAAGGCTCGGTTGCCGAAATCTCGACAATCGCAAAGGAGGTGGACAAGGTCAACCAGATTATTAACAATTGCATAGATGCTCTGAAATCAGAGTCCACCTCCTTCCAAGGGGTGAAATCTGGTGCTGTGTCGACAGCCGAACCTCAGTTGGTACTGATCTCAGAGCAGCCTCAGAGCAAGTCTGGCTTCCTTTCACCTGTCTACAAGGACAGCTACCACCACTCTTTACAAAGACATCATGCATCAGATGCCTCTCCGAAGCGTCCGAGTACAGCGACTGGTGGTCCAATGCGGAGCCCGAGGCCTTACCGTTCAGAAGGCTCGTACAAGTCGGAGTCGAAGTACATAGAGAAGACTTCACCCACAGGGGAGACTATCCTGACCATCACGCCCGCAGCTGCAATACTAAGGGCAGAGGCAGAGAAGATCCGTCAGTATAGCGAGCATCGGCACTCCTACCCCGACGCCCACCAAATTGAGGAGCTGGAAGGACCGGACAGCCGGAAAACCTCCATCTTGGAGCCCCTTACACGGCCTCGGGCTAGAGACTTGGCTTACTCGCAGCTCTCTCCCCAGTACCACAATCTTAGTTACTCATCTAGTCCTGAGTACTACTGCAAACCGTCGCACAGCATCTGGGAGCGCTTTAAACTCCATCGCAAGCGACACAAAGATGACGAGTACATGGCTGCGGGCCACGCTCTGAGGAAAAAGGTGCAGTTTGCTAAGGATGAAGACCTGCATGACATTCTAGATTACTGGAAGGGAGTGTCGGCCCAACATAAATCTTAATTTACTCAAGTGTTTGTCTGTGTCTTTTTCATTTTCGATGGACCACAAAGAACAGGACCAGAATGAATCCTTAATCTTGTGAAATCACATTCTAATGGATAAATATTACACTTAAGTGAATTTCAACTTAGGGAAAGAGGTTTGTGTACCAAAA

Function

symbol description
elfn1a Used to study schizophrenia. Orthologous to human ELFN1 (extracellular leucine rich repeat and fibronectin type III domain containing 1).
elfn1 Predicted to enable protein phosphatase inhibitor activity. Predicted to be involved in synapse organization. Predicted to be located in dendrite and excitatory synapse. Predicted to be active in extracellular matrix and extracellular space.

GO: NA

KEGG:

id description
K17567 ELFN1; protein phosphatase 1 regulatory subunit 28

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_02674254_02676647.mRNA True 2742 mRNA 0.48 1 2674060 2676801

Neighbor

gene id symbol gene type direction distance location
CI01000046_02616123_02661535 NA coding upstream 12096 2616047 ~ 2661964 (+)
CI01000046_02451052_02454565 MAFK coding upstream 219389 2442395 ~ 2457280 (+)
CI01000046_02365658_02365816 NA coding upstream 307874 2365658 ~ 2366186 (+)
CI01000046_02356713_02359204 NA coding upstream 314051 2356654 ~ 2360009 (+)
CI01000046_02335530_02348525 NA coding upstream 325115 2333974 ~ 2348945 (+)
CI01000046_02794245_02796188 NA coding downstream 117078 2793879 ~ 2797088 (+)
CI01000046_02868880_02871348 NUDT1, 8ODP coding downstream 192079 2868880 ~ 2871611 (+)
CI01000046_02911888_02930362 NA coding downstream 234344 2911145 ~ 2930993 (+)
CI01000046_02933552_02949246 NA coding downstream 256686 2933487 ~ 2949318 (+)
CI01000046_02981176_03006650 NA coding downstream 304026 2980827 ~ 3006675 (+)
G196119 NA non-coding upstream 24873 2309820 ~ 2649187 (+)
G196107 NA non-coding upstream 193016 2437850 ~ 2481044 (+)
G196209 NA non-coding upstream 287816 2385750 ~ 2386244 (+)
G196177 NA non-coding upstream 371982 2301855 ~ 2302078 (+)
G196687 NA non-coding downstream 88067 2764868 ~ 2765242 (+)
G196691 NA non-coding downstream 98570 2775371 ~ 2775660 (+)
G196703 NA non-coding downstream 115160 2791961 ~ 2792212 (+)
G196698 NA non-coding downstream 117569 2794370 ~ 2873461 (+)
G196744 NA non-coding downstream 264347 2941148 ~ 2941489 (+)
CI01000046_01865451_01881353 NA other upstream 714912 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 1110723 1539494 ~ 1668012 (+)
G195003 NA other upstream 1512370 1161157 ~ 1161690 (+)
G194721 NA other upstream 2213715 458008 ~ 460345 (+)
G196936 NA other downstream 510194 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1267027 3943794 ~ 3945500 (+)
G197055 NA other downstream 1472622 4149423 ~ 4149780 (+)
G197121 NA other downstream 1694210 4371011 ~ 4371430 (+)
G196869 NA other downstream 1738729 4415530 ~ 4421687 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018091 elfn1,elfn1a,LOC107703384,LOC107674694,LOC107572165 coding CM030135.1 CM030135.1 1508994 ~ 1511372 (+)