CI01000046_02911888_02930362


Basic Information

Item Value
gene id CI01000046_02911888_02930362
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2911145 ~ 2930993 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_02911888_02930362.mRNA
CTTTAAAATAATGAGACATCTTGCCAATAAAGTTGCAAAGGCCAGAACCTTTTGCAGTGATGCTGGAAAGTACATTTCAGATGGTTCTTCAAAGATGGCTGACAGTGGATTTGGATCAAGGTTTATATACATCAGTTAAAGGGATAGTTCATCCAAAAATGAAAATATTGTCATCATTTACTCACCCTCAAGTTGTTCCAAACCTGTATGAGTTTCTTTCTTCTGTTAAACACAAAAGAAGATATTTTGAAGAATGTTGGTAACCAGACAGTTGACACCATTGATTTCCACAGTAGTTTTTTTCCTACTATGGAAGTCAATGGCTACCGTCAAAAAATCTTCTTTTGTGTTCCACAGAAGAAAGAAAATCATACAGATTTGGAACAACTTGAAGGTGAGTGAATGATGACGCAATTTTCATTTTTGGGTGAACTATCCTTTTACGAACATTTACTGTACAGCCGAACATATAGTGAATCAAAGTATAGATAGTGTGGGCGGAAATAAGCAGTCAACACACGCGCGATAGAATTTTTCATCTTTGTCCGGTGTCTGCGTTGTTTGTCTCCAAAAGTTATGACCGAAAAAATGTTTTTGAATTTGTTTCAACGAGTTGCGGGGTATCTCTTAAATCCCTCACACAAGTGCTTGTCAACGCAGGGGTCTTTTGTTGTTGCGTCTCCAGTAGATTGTTGTTGTTGTTCTTGTTCCATCTCTTCAGTTTCTTTTTCAACTGTGAAACAATGGCCCGGGCCAGTGTCGCCGCCACAAAAAATTCAAAGTGCATGCATGAGCTGAGCTCCATCCTGCTGTTGGGCAGTGTAGCTCTGGCCTGCTTGGCTTTGGACCTCCTGTTCCTCCTCATCTACTCCTGCTGGCTGTGTTGCCGCCGTAAGAAGAGCTCCGAGCAGCCGAATGCAGACTGCTGCTGTACCGCCTGGTGCGTCATCATCGCCACCCTCGTCTGCAGAGTATGTCTCGCTCTGTCAGTCAGTCACACATTCAATACATTCTCTATATCAGTTACTGAAACTCTTCTCTCTTTCTCTCTCATGCTTACTGCTTATTCTGTTCTCACCATTGGGATGCAAAATGCACCGACGACGTTCCCGAGGATGATGCATGAGGTACTGGCTAACATTCCAAATAGTGCAGCTTACTGGGATGACATAGTTATCTATTCTAATGAGTGGCAAGACCCACACATAAATGTGAAAAAGTGCAGATTCTGCATGGACTACTTATCACTTATGCATGAGGAGGAAACAAGCTCATGGCGTCCGTCCAGTGGACAGTTTTGCCTTAGACCCTGTGGATCTAGACAGTCTATAGGAACAGATTGTTTATTTTGTTTCAATTCTGATTCATATGGGTATATTTCAGTTCCATTAGGTATATTTTCATGTCCATTTTTTCTTACATTGGAAAGAAAATCAGTCTCTGCTAATGCTGAAATTATATTGGACGATTATCCACCAGATTTGCAGTGTAGTAGGAATGCTGGGAACTCCACTGAGACCTCTCTAATGGGTCACATGACCATAGCCTCCGGGGAAATGGCGAGCGCTGGCATTGCTGTTGGTTTCTACGGGAACGGTGAGACCTGTGACGGCGTGAATCGACTGACTTACTCACTCCGTCATGCCAACCGCACCGTGTCAGGAGTGCAGAGACTGGTGTCAGAAAGTACATCAGCTCAGAGCCAGACTGTGGACGAGAATCTTCAGCTACTAAAGGACCAGTATGCAAAGCATACAGACTACCTGTCCATCATACAGAAACTGCAGGATCAGCGGGCTGAGCTGGTTCGTCAGATGGCTGACATTCCTTTTTGGAACAACCTCAGCATCTCCTTGGAGGATCTGGCAACCCAGATTGAACTATATGACTGGTACAGGTGGCTGGGCTACCTGGGTCTGCTGCTGTTTGATGTGCTTATTTGCCTGCTGGTGCTCTTCGGTCTCATCCGCAACTCCAAAGGAACTCTGATTGGGGTGTGTTTTCTGGGTGTGTTGGCGCTGGTAATCAGCTGGAGCTCACTGGGTCTGGAACTGACTGTCTCCTCGGGCTTCAGTGACTTCTGTGCGGCACCTGACATGTACATTAACGAGGTGTCAGAGCAGTACGCGCTTATCAAGAAAGCATTACTCAACACAGCAGTTCCTCTTCAAAGTGACCTTATTATCCACAGGAGGCTGGATGCTCTCAGTAAATCAGAGGGCAGAAACAACTGTGTGGGTGTTATCCCCCCAGCCTGTGTTTGTTTTGCGCGCCCGAGCCTTCCTCTTTGGGTGGCCGGAGCAGGAACATACATTCTGGTCAAGCCTAATCGAGGTGAACTCAGGGTTCTTCCCATTGGAAAGTGGTCTTCCTATGACTTATTCCCTGAAAAGGAAGCATTTTCACTGGCTTGAACATGTGTGAATCCTATTTAAGAGGACCTGTTATGCTTCTTTATGTTTTCAACTTTCAGTTGATGAATGACCTCTTAGTTAATGACCCCCAGCATTGGTGTACTTCTGAATGCATGTGAAGCCCTATATGCTTTAGTGTAGCATAAGCAGGTTCAATATGTCAACTTTGGCCTAGGTTATGATTAATCAATTTGTTGGTCAGCTGTGAAGAGAAGACTTACAGCAAAGAGAACTTCTGGAGAACAGAATACAGGAGAGAGATAAGAGGAGAGGAAGAGAAAACTGCTGAAGGATGGGGATGATAAACCATGTGACTCTCAGCTTCACACACCCATGAAATTGTGTCTTCTGGGCTCTATTCTTATCTTTGTTCTTCCTATCTTCAGTCTTTCTCTCATTTGCTCTAAATAACTCCTTAAAGGGATAGTTCACCCAAAATTGAACATTGTGCCATTATTACTCACCCTAATATAATTTCAATTTGTTTTTTTTTGTTTTTTTTTTGTTTTGTTTTTTTGTTTTTTTGTCTGTGCAATTAAAAAGAATTAAGATTGTTTTACCCAGACTTTTTCTGTCTAACCCGGTTCATAGTGACCATGTGCAGTCAAGCTCCAAAAATGACAATAAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_02911888_02930362.mRNA True 3045 mRNA 0.43 13 2911145 2930993

Neighbor

gene id symbol gene type direction distance location
CI01000046_02868880_02871348 NUDT1, 8ODP coding upstream 39534 2868880 ~ 2871611 (+)
CI01000046_02794245_02796188 NA coding upstream 114057 2793879 ~ 2797088 (+)
CI01000046_02674254_02676647 ELFN1, ELFN1A coding upstream 234344 2674060 ~ 2676801 (+)
CI01000046_02616123_02661535 NA coding upstream 249181 2616047 ~ 2661964 (+)
CI01000046_02451052_02454565 MAFK coding upstream 456474 2442395 ~ 2457280 (+)
CI01000046_02933552_02949246 NA coding downstream 2494 2933487 ~ 2949318 (+)
CI01000046_02981176_03006650 NA coding downstream 49834 2980827 ~ 3006675 (+)
CI01000046_03041320_03042564 GRIFIN coding downstream 110327 3041320 ~ 3042750 (+)
CI01000046_03046400_03047689 NA coding downstream 114786 3045779 ~ 3048432 (+)
CI01000046_03138487_03139142 NA coding downstream 207494 3138487 ~ 3140879 (+)
G196698 NA non-coding upstream 37684 2794370 ~ 2873461 (+)
G196703 NA non-coding upstream 118933 2791961 ~ 2792212 (+)
G196691 NA non-coding upstream 135485 2775371 ~ 2775660 (+)
G196687 NA non-coding upstream 145903 2764868 ~ 2765242 (+)
G196123 NA non-coding upstream 161179 2649288 ~ 2749966 (+)
G196744 NA non-coding downstream 10155 2941148 ~ 2941489 (+)
G196749 NA non-coding downstream 35195 2966188 ~ 2966536 (+)
G196754 NA non-coding downstream 50585 2981578 ~ 2981812 (+)
G196757 NA non-coding downstream 59171 2990164 ~ 2990436 (+)
G196773 NA non-coding downstream 85472 3016465 ~ 3016713 (+)
CI01000046_01865451_01881353 NA other upstream 951997 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 1347808 1539494 ~ 1668012 (+)
G195003 NA other upstream 1749455 1161157 ~ 1161690 (+)
G194721 NA other upstream 2450800 458008 ~ 460345 (+)
G196936 NA other downstream 256002 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 1012835 3943794 ~ 3945500 (+)
G197055 NA other downstream 1218430 4149423 ~ 4149780 (+)
G197121 NA other downstream 1440018 4371011 ~ 4371430 (+)
G196869 NA other downstream 1484537 4415530 ~ 4421687 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018104 NA coding CM030135.1 CM030135.1 1796402 ~ 1802228 (+)