CI01000046_02981176_03006650


Basic Information

Item Value
gene id CI01000046_02981176_03006650
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 2980827 ~ 3006675 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_02981176_03006650.mRNA
GTATAAGAAACCAGGCAGAGGGGTCAACCTCCCCCAGTCTCTGTTCTTTTTTAGGATCAGCACCCTTTTTTACTCTGGGATGGAGGAACACTTTGACAGGCTCCTTGTCAGACTCCTCAGACAATCTGTGCAATGAAAAGCAGGACTAAACCACACAATGCAAAAGTTCCGCTTGTTTCCAGTCACCCCCTTCCCCTCCTCCTCTGATGGATAACAAAAAAGGGAAGAAAAAAGTTTCTTTTTTTCTATACTCTCTTTCATTCTCAAAAAAAGGCTCCCCCCATCTGCCCTCCATACCACATCCCGGATCCTTCCCCATTTGAAGACATTACCGCTGAATTCCAATTAAATGAAATCTCCCATCAAGCACAGCCTGCTTCCCCACAAGAATGCCCAGCGATATTGCAACAACCCCATTCCAGCTATCCCACCGTGGCATCTGGAGCAAAATGATGAAGAATCTCAGAGGAATGGATATGATTACCACTATGCTATTTATAGAGTCACTTTTAATGTGTGTAGCACAAAGGAGAGGTTTCTTTCTCCAAAGCTTTTGGATGAAACGGGATTCCAGACAGTGATGGCCCTGGATATCATTCTATGGTCTCGCTGCATGCCAATAGGCCTGTCACTAGAAGCACCCATGGCATTCCAGCCACAAATACGAGTGGGTTTAAGTTGTCGGGTTTCCCCACCTTTGGGTTCTGAGAACGCTGCCAGTTGTTATGATCCCATTTTGGTTATTCGAATGCTAAATGGCATTGGGAATGCTGAGATGGCTCCTCTGGGAGAATATCAGGAGATCTCATTATGTGGATCTCCTGGTGCTTTCAATGACGTGTGTAAGTTAAACACCATAAAACAGCATTTCAAGTTGATGATGAAGGCCACACAAATCATACTTGCAAGCGCGAAAGTCATTGCCCAAAGTGTCAGAAGCCTCAGCGCTGGGGACACAATCTGCCAATGTGGCATAAGGAGAATACTGAAGCCAGTGGGAAGCGATACTGTAAGAAGTACTAGAGCCGGTCTCAGGCGCCTCAATGTCACCATTATGACCTGCCTGAGTCCCTCAGAGCTCATAAAGGTCCTGGGCCTCGCACTAGCCCGATACCTGATCTGCTTCCCAGTCAACCCGCCTTTACGACCCCCTGATTTCCCTTCCCTCAAGGGCTCGGGACGGACCAGTGGCCCCATGGAGTCAATCTGTCTCTGGTACAGTAACGGCTGGCTTTTGAAGCCCCGTTTGACTAATTTTCCCCATCAAGAGAGGCCCAAACATGTGAGTGCGATGCCTGGGCCCTCAACCCTGCTGCTGCTCCATCACTGTACGCACAGGAAGAGAAACAATGACAGATGGGACGGCCATTCAAGCTTGCTAAAAATGCATCTGTGGGTCATCTGGTGTGGTTTTCATGTTAAGTTCAGCCATAAAACTTCTTTTATTATTTTTTGGTGTTTTCATCTGGATAAACACACTGTCCTGAGCAGAAACTCAAGCTCAATATACTCCATGATGGAGCTCCAACAGAGACAATATAGGCGAGATGGCATGGGCGCTGAAGAGACAGCATGTCCTAATGAGCAAAGGAGATCAGAGGATGGTTCAGTATCAGGCTGTTTAAGAGAAGTCTTTCTTCTTGGAGAGAAGGCGGCTTTTAGGGGCTTTACGCAGGGGTGCGCTGGAGTGGTGCTTCTCCTTTCTCTCTTTCGGCAGGGAGGCTATTTTGATTTAAATGAAGGCTATCTATCAGAGGGTGGGAAGGTCTTTCAGTGTATGAATGGAAGGCATCAGTGGCTCTCTGCCATCGCTGTGACCAATCGCCCCTCATTTGCCCTCCACTGTAAGCAGTACCTACAATTTCAGAAGAACCTCTGCTTTTTGTACGATGATGTCTCCCAGGGAATGTTCAGACAGATTGAAGAGGCTTTGCATGGGTCATTCCTACAGGGACGTCAGCATGAGCAACAAGGGTCAGACTCTTTCCACGCAGCAGATGCGGCCTGCGTTTTCAGCAACACGTACCGAGGACATCTCTACATACTTTCATGTAATCTAGTCAAAACTAAAACCCTACAGGCTGTCAAAACTAAAAATCTATTATGTGCTCAGTGTTTTAAGTACTTGCCTGATGGATTTCCAGTAATCTGCCCAGTAAGAGGATCTAAACACCAAACAGCTCATTTCCATGTGTCCTATTTAACATATTTAGAAGCTGAAGAGCGACTAATGGCACTTGTGGCAGACGGCAGGGCAGTCTGGGAGGAGACGGGGCTCCGCTGGAGGCCTGCAGCAGTGAACTCAATCAATGAAGTCACTGGCACTGCTTTACACAAGGAACTGTGGAATTCACTGGCCACAGACCATCCCATTATTGGACTGCAGCAACCCCAAAACCATGGGGAGCTGCGGACACAAGATAAGGACAAAAAACTGCTTATTCTTAGTGCTGGCCAGATATTTCCTCAGTTAGGGAAGACCCCTGATCACAAAAACACCCAGTCGTTTGCTTGGATTCCACCCTCCTTTCCCTTTCAGCCGGGAGACGTGGAGCAGGACGCTCAGAGGTCTCTTATGTCAGAGAAACATTCCTCATACGCTTCCTACCGTGCAACAATCATAATATCAGTCATCCTCGGCAGAGACGCAAGCTCACAGAGAGCTTGGATGGCTGTCATGCTTTTTGGTGTGGGCAGTTGTTTTCGTACACATAAGCACTTCATCATCTACGGTGAAGATTCCCACCACTGTCCGCAGTTTTTCATGGGCTGTTATAGGAGTTATTTATCACATCCCTACTGTCTCTTGGACTGCTTACACAGAGGCTCAAATATATCTGCTTGAAACATAAATCTTATTTGGCAATGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_02981176_03006650.mRNA True 2870 mRNA 0.47 16 2980827 3006675

Neighbor

gene id symbol gene type direction distance location
CI01000046_02933552_02949246 NA coding upstream 31509 2933487 ~ 2949318 (+)
CI01000046_02911888_02930362 NA coding upstream 49834 2911145 ~ 2930993 (+)
CI01000046_02868880_02871348 NUDT1, 8ODP coding upstream 109216 2868880 ~ 2871611 (+)
CI01000046_02794245_02796188 NA coding upstream 183739 2793879 ~ 2797088 (+)
CI01000046_02674254_02676647 ELFN1, ELFN1A coding upstream 304026 2674060 ~ 2676801 (+)
CI01000046_03041320_03042564 GRIFIN coding downstream 34645 3041320 ~ 3042750 (+)
CI01000046_03046400_03047689 NA coding downstream 39104 3045779 ~ 3048432 (+)
CI01000046_03138487_03139142 NA coding downstream 131812 3138487 ~ 3140879 (+)
CI01000046_03205894_03253907 NA coding downstream 198917 3205592 ~ 3254330 (+)
CI01000046_03347042_03438271 SDK1, SDK1A coding downstream 340367 3347042 ~ 3438271 (+)
G196749 NA non-coding upstream 14291 2966188 ~ 2966536 (+)
G196744 NA non-coding upstream 39338 2941148 ~ 2941489 (+)
G196698 NA non-coding upstream 107366 2794370 ~ 2873461 (+)
G196703 NA non-coding upstream 188615 2791961 ~ 2792212 (+)
G196691 NA non-coding upstream 205167 2775371 ~ 2775660 (+)
G196773 NA non-coding downstream 9790 3016465 ~ 3016713 (+)
G196780 NA non-coding downstream 16484 3023159 ~ 3023393 (+)
G196809 NA non-coding downstream 36516 3043191 ~ 3043482 (+)
G196784 NA non-coding downstream 76258 3082933 ~ 3084120 (+)
CI01000046_02451052_02454565 MAFK other upstream 523547 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1021679 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 1417490 1539494 ~ 1668012 (+)
G195003 NA other upstream 1819137 1161157 ~ 1161690 (+)
G194721 NA other upstream 2520482 458008 ~ 460345 (+)
G196936 NA other downstream 180320 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 937153 3943794 ~ 3945500 (+)
G197055 NA other downstream 1142748 4149423 ~ 4149780 (+)
G197121 NA other downstream 1364336 4371011 ~ 4371430 (+)
G196869 NA other downstream 1408855 4415530 ~ 4421687 (+)

Expression


Co-expression Network