CI01000046_03041320_03042564 (GRIFIN)


Basic Information

Item Value
gene id CI01000046_03041320_03042564
gene name GRIFIN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3041320 ~ 3042750 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03041320_03042564.mRNA
TTTGAGGCGTCCTGTCCTGATGGTCTGTGTCCAGGATGGAGTATTATCCTGAAAGGAGAGACTCCAGCAGAGGCCAGCAAGTTTGAGATCAATTTCCTGTGTGAACGCGATGACAGAGTAGCTTTCCATTTCAACCCCCGATTCACTGAGTCCGATATCGTCTGCAACTCCTACATGGCCAACCACTGGGGGCAGGAGGAGAGGTGCAGCAGCTTCCCCTTGGGAGTAGAGGAGCCTTTCCAGATTGAAATTTACTCTGACGATGATAACTTCTACGTTTACATTGACGAAACCAAGGTGATGCAGTATAAACACCGGGTGGAAGAGCTGAAGACCATCACAAAAGTACAAGTGGTGAATGATGTCAATATCTCCTCTTTAGAGATCACCAAAAAACACTTCTACTGAGGGTGGGCAGTAAGGTCAAGCAGATGATTCATTTGGAGTGCGCCTTTTGTTTGTTTACAGTGAGTTATTGTTTTTTGCATTCATGTTTACACACCTTTCATGCCTCTTGGGTTCATCTTCCCGTACAGGTATGATTATTGGTATTGACATGCCTTAGCTGAACTACATATTCATATGAATCTGTCA

Function

symbol description
grifin Enables lactose binding activity. Acts upstream of or within camera-type eye development. Predicted to be active in cytoplasm. Is expressed in brain; eye; pleuroperitoneal region; and solid lens vesicle. Orthologous to human GRIFIN (galectin-related inter-fiber protein).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03041320_03042564.mRNA True 594 mRNA 0.45 3 3041320 3042750

Neighbor

gene id symbol gene type direction distance location
CI01000046_02981176_03006650 NA coding upstream 34645 2980827 ~ 3006675 (+)
CI01000046_02933552_02949246 NA coding upstream 92002 2933487 ~ 2949318 (+)
CI01000046_02911888_02930362 NA coding upstream 110327 2911145 ~ 2930993 (+)
CI01000046_02868880_02871348 NUDT1, 8ODP coding upstream 169709 2868880 ~ 2871611 (+)
CI01000046_02794245_02796188 NA coding upstream 244232 2793879 ~ 2797088 (+)
CI01000046_03046400_03047689 NA coding downstream 3029 3045779 ~ 3048432 (+)
CI01000046_03138487_03139142 NA coding downstream 95737 3138487 ~ 3140879 (+)
CI01000046_03205894_03253907 NA coding downstream 162842 3205592 ~ 3254330 (+)
CI01000046_03347042_03438271 SDK1, SDK1A coding downstream 304292 3347042 ~ 3438271 (+)
CI01000046_03443490_03508344 SDK1, SDK1A coding downstream 400527 3443277 ~ 3508481 (+)
G196780 NA non-coding upstream 17927 3023159 ~ 3023393 (+)
G196773 NA non-coding upstream 24607 3016465 ~ 3016713 (+)
G196757 NA non-coding upstream 50884 2990164 ~ 2990436 (+)
G196754 NA non-coding upstream 59508 2981578 ~ 2981812 (+)
G196749 NA non-coding upstream 74784 2966188 ~ 2966536 (+)
G196809 NA non-coding downstream 441 3043191 ~ 3043482 (+)
G196784 NA non-coding downstream 40183 3082933 ~ 3084120 (+)
G196975 NA non-coding downstream 519747 3562497 ~ 3563548 (+)
CI01000046_02451052_02454565 MAFK other upstream 584040 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1082172 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 1477983 1539494 ~ 1668012 (+)
G195003 NA other upstream 1879630 1161157 ~ 1161690 (+)
G194721 NA other upstream 2580975 458008 ~ 460345 (+)
G196936 NA other downstream 144245 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 901078 3943794 ~ 3945500 (+)
G197055 NA other downstream 1106673 4149423 ~ 4149780 (+)
G197121 NA other downstream 1328261 4371011 ~ 4371430 (+)
G196869 NA other downstream 1372780 4415530 ~ 4421687 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026684 grifin coding NC_007114.7 CM002887.2 41784542 ~ 41795917 (-)