CI01000046_03138487_03139142


Basic Information

Item Value
gene id CI01000046_03138487_03139142
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3138487 ~ 3140879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03138487_03139142.mRNA
ATGGATGCAGGGACCACTGCATTCAACAGATTGGCAAACCATCTGCCACAGCAAATTGACACTCTCGAGACGTACGCAACACTTCCTGTAGCGATCTGCTGTGTAAAGAAAGGCACAAACAAAAACCGCTGGAAGCGACAGATCCGAGAGCCTCTTCAATGGTGTTTACAATCACAGTGGAAAGTTGGTTTACCGTCAGAGTTGTTGTCTGCCAGTGACGCTACTCTGAGAGGAACCACCACCAACACCACATAAAGCAACAAGATGTCTGCTTGTCAGGGCCCAACTGAAATTTCCACTGCGCTGCTCGTGACACACTCTCTCCAGGATTTCTCCTCTTTTCAAGCCCTTTAACTGTTTTTCAGTTCTCATTTCAACAGCAAAAACGTGTCAGTTTCTTTCTGAAGCACATGTGCGTGAAGTTTTAACCCAGAAAACAGAAATGCTGCTTCTCAAATCCTTTTATTACATAAAACACACAATGTGTAATGTTGTTTCAGCTGCGAAGTACATTCCTGTGTCTGTTTACAAAATAATATGTACAAAAATAGTTAAAATCACGGCTTGGAAGTGGGTTATTACACACAAAAAAAGTTTCTTAATATCTTAATAAGTGACAAATTTGTGTCATTTTTCCAAAATTGATACCCCTCAACACATGTACACCCCTGGATAAGATGCCATTACATATACAAACATTAGCTAAAAAACATCCTGACTTCTAGATAATAGAGTTGCGGTTTGATTTTTATTAAACAGGTGCTAAGGCTTGTGCAGTAAATTTCCCCTTCATCATTCTCAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03138487_03139142.mRNA False 804 mRNA 0.40 2 3138487 3139691

Neighbor

gene id symbol gene type direction distance location
CI01000046_03046400_03047689 NA coding upstream 90055 3045779 ~ 3048432 (+)
CI01000046_03041320_03042564 GRIFIN coding upstream 95737 3041320 ~ 3042750 (+)
CI01000046_02981176_03006650 NA coding upstream 131812 2980827 ~ 3006675 (+)
CI01000046_02933552_02949246 NA coding upstream 189169 2933487 ~ 2949318 (+)
CI01000046_02911888_02930362 NA coding upstream 207494 2911145 ~ 2930993 (+)
CI01000046_03205894_03253907 NA coding downstream 65901 3205592 ~ 3254330 (+)
CI01000046_03347042_03438271 SDK1, SDK1A coding downstream 207351 3347042 ~ 3438271 (+)
CI01000046_03443490_03508344 SDK1, SDK1A coding downstream 303586 3443277 ~ 3508481 (+)
CI01000046_03511698_03542614 SDK1, SDK1A coding downstream 371714 3511405 ~ 3542844 (+)
CI01000046_03544999_03551574 CYP3C4 coding downstream 405308 3544999 ~ 3551897 (+)
G196784 NA non-coding upstream 54367 3082933 ~ 3084120 (+)
G196809 NA non-coding upstream 95005 3043191 ~ 3043482 (+)
G196780 NA non-coding upstream 115094 3023159 ~ 3023393 (+)
G196773 NA non-coding upstream 121774 3016465 ~ 3016713 (+)
G196757 NA non-coding upstream 148051 2990164 ~ 2990436 (+)
G196975 NA non-coding downstream 422806 3562497 ~ 3563548 (+)
G196885 NA non-coding downstream 483021 3622712 ~ 3642563 (+)
G196857 NA non-coding downstream 499218 3638909 ~ 3641270 (+)
G196846 NA non-coding downstream 504492 3644183 ~ 3644698 (+)
CI01000046_02451052_02454565 MAFK other upstream 681207 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1179339 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 1575150 1539494 ~ 1668012 (+)
G195003 NA other upstream 1976797 1161157 ~ 1161690 (+)
G194721 NA other upstream 2678142 458008 ~ 460345 (+)
G196936 NA other downstream 47304 3186995 ~ 3194271 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 804137 3943794 ~ 3945500 (+)
G197055 NA other downstream 1009732 4149423 ~ 4149780 (+)
G197121 NA other downstream 1231320 4371011 ~ 4371430 (+)
G196869 NA other downstream 1275839 4415530 ~ 4421687 (+)

Expression


Co-expression Network