CI01000046_03205894_03253907


Basic Information

Item Value
gene id CI01000046_03205894_03253907
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3205592 ~ 3254330 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03205894_03253907.mRNA
CAATAAAAAGCCTGACGGGATCCTGTAAAGTGAATCAGTGTGGTGTCATCAGTGTAATGCATAGGCTACATTTAATTACAGCAGGACTCAGTAACGTATATTTATAAACCCGTAATGACTTGTGTGCAGTGAGTGCGCGCCTTCGCGGGCTTCACGCGCAGTGTCTTCATTTAACTGTTAATGAAAAGCACATTATTTGCCAGGAACTTTCGACTGGGCAGAATGTACGTTTTCTAATTGCCAGTTCTCGTGGATAAGAGTTAAACTTGCGGAGAGCGAAACGGAGCGCGCGCGATACCGGAATGGGCGCCAGTGGATCTGATCCCACAGAGAGAAAATTCACAGGTCTGTCTAAAGCACAGAGACCTGGGAGACACAACACGGCAGTGGAGGAGGACAGTGTTTACTCAGGAGGCAACGGCTCCCGTAAAGCCACAGAGCGCACTTACTCAACATCACTTCTCACACGCGTGGACAAGAATGCCATCATGTGTGAGCACAGGAGCGCTTCTTCCAAGATTTTTACACGTTTCTCCGGGAGGAATGCGAGCGGGAATGGAAGGAGAAAGTTTGCATTGTGCACTTGGAGTTGGTGGGCGTTTTTCTGCGTTCACGTCCACGTGTTGAGAGCGGTCACACAAGTTGAAATTTTTGGCTGCTTGGGTCTGGCAGAGGACCACAATGCCCTTAAAACCAAACGCCCGGGCAGAGAGGGAGTTTGTCAAGCAGTAGCAGGTGCACAATCCCCCTGCCGTGCTTCTAGAAAGGTCTCTGGGCTAATGATGTTTGTGCCACAGCATTGTGAAGGTTATCTGGCTTCAACAGACTTTGTCAGATCCCTAACCTTTGCTGGGTCTGAGTTGAGCAGAGTCGGGATGGAGTTGAAAATGGCAATGGAAAAAGTTTGGGTGTTAGAAATGTCATCTGGATCTGATCCTAGTTCTTCAGAAGGAGAAGACCTTGTCAATATCAAGGTTAGACATTCCCTTGTGAAACCGGGAAAGCCCAGACTAGTGAGCATCTCAGATTCAAACTTCAACAGCAAAAGTGGCTTCAGTTCATTTCTGTGAGTTGTTGTTGTTGTTTAACCTAACCACATGTGACCGTTAAGAGATGGTTATCTTTAATTAAAAGCCAATTTACATTGAGTTGTGAGAGCAATTACTCTGATATGAATACAAAAGTTGGTACAATGTTTAGCTCTGTCAACAGCTTTTATTACCATCATTGTTCTCACATTAATTAGAGCTATTAAAACAGACCTAGGCATCCATGTTAGCAAGCAAAATATAACTGTAATCAGGTAAAATAATGTGTCTCTGTATTCACACTGTTTACGGCTAACAGATGGAGCCTGAACTTGAAAGTCCTGGTAGAAATGTTACCCATGGGGTGTCTCGGGTTTTGCATTTCCTCATGTAATTTTCTAATTATTATCTGAATTTATGTAAATATTATGCTGGTGTCATTAAATATGATAGATATTGCGACTA

Function

NR:

description
protein sidekick-1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03205894_03253907.mRNA False 1493 mRNA 0.44 6 3205592 3254330

Neighbor

gene id symbol gene type direction distance location
CI01000046_03138487_03139142 NA coding upstream 65901 3138487 ~ 3140879 (+)
CI01000046_03046400_03047689 NA coding upstream 157160 3045779 ~ 3048432 (+)
CI01000046_03041320_03042564 GRIFIN coding upstream 162842 3041320 ~ 3042750 (+)
CI01000046_02981176_03006650 NA coding upstream 198917 2980827 ~ 3006675 (+)
CI01000046_02933552_02949246 NA coding upstream 256274 2933487 ~ 2949318 (+)
CI01000046_03347042_03438271 SDK1, SDK1A coding downstream 92712 3347042 ~ 3438271 (+)
CI01000046_03443490_03508344 SDK1, SDK1A coding downstream 188947 3443277 ~ 3508481 (+)
CI01000046_03511698_03542614 SDK1, SDK1A coding downstream 257075 3511405 ~ 3542844 (+)
CI01000046_03544999_03551574 CYP3C4 coding downstream 290669 3544999 ~ 3551897 (+)
CI01000046_03556534_03559710 CYP3C1, CYP3C2, CYP3C3, CYP3C4 coding downstream 301876 3556206 ~ 3559837 (+)
G196784 NA non-coding upstream 121472 3082933 ~ 3084120 (+)
G196809 NA non-coding upstream 162110 3043191 ~ 3043482 (+)
G196780 NA non-coding upstream 182199 3023159 ~ 3023393 (+)
G196773 NA non-coding upstream 188879 3016465 ~ 3016713 (+)
G196975 NA non-coding downstream 308167 3562497 ~ 3563548 (+)
G196885 NA non-coding downstream 368382 3622712 ~ 3642563 (+)
G196857 NA non-coding downstream 384579 3638909 ~ 3641270 (+)
G196846 NA non-coding downstream 389853 3644183 ~ 3644698 (+)
G196994 NA non-coding downstream 517512 3771842 ~ 3772078 (+)
G196936 NA other upstream 11321 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 748312 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1246444 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 1642255 1539494 ~ 1668012 (+)
G195003 NA other upstream 2043902 1161157 ~ 1161690 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 689498 3943794 ~ 3945500 (+)
G197055 NA other downstream 895093 4149423 ~ 4149780 (+)
G197121 NA other downstream 1116681 4371011 ~ 4371430 (+)
G196869 NA other downstream 1161200 4415530 ~ 4421687 (+)
G197352 NA other downstream 2020052 5259318 ~ 5276453 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026681 BX537310.2 non-coding NC_007114.7 CM002887.2 41396123 ~ 41512210 (-)