CI01000046_03347042_03438271 (SDK1, SDK1A)


Basic Information

Item Value
gene id CI01000046_03347042_03438271
gene name SDK1, SDK1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3347042 ~ 3438271 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03347042_03438271.mRNA
ATGACCTGCCTTGCGGAGGGCAGCTGGCCTCTGGAGTTCAAATGGATGCTCAACAACACAGATATCACAGCCTTCTCCCCCGAGTACAAGTACACCATCTCCTCTCTCCGGCGCTCCAATATGGGTGTTTACCAGTGTGTGGTGAGAAACAGGATGGGCGCTCTGCTCCAGAGAAGAGCCGAGATACAAGTGGCATATATGGGCGACTTTATCGACAATGACCAAAGAAAGACGGTGACGCAGGGCCGGGCCGCCATCCTCAACTCCCCAGTGGTCAGTTGCTTCCCGCGGCCACAGGTGACATGGTTCAGGGACGGCTACAAGATCATTCCCAGCAACAGAGTAGCCATAACGTTGGAGAACCAGCTAGTGGTGCTTGCCACCGCTGCGGCGGACGCCGGGAGGTACTACGTCCAAGCTGTTAATGAGAAGAATGGAGAAAACAAGACAAGCCCATCTATTTACCTGAATGTGGCAGATTCAGAGGCCCCGGCGGACCCTGTGGCTCCAGTGATTGTAATCTCACCCCGAAACACTACGGTGGTGGCCGGGGTCAGTGAGGCTACGCTGGAGTGTGTAGCTAATGCACGTCCGGTTGAAAAGCTCAATTTGGTGTGGCGAAGAAACGGCGTGGAAGTGGCGACCGGTGTGGGCTCCTTTGGCCGACGCTTGACCATCATCAACCCAACTAGTGCCGACGTGGGCATGTACGTGTGCGAAGCCTCACTTTTAGACAGCAGTGTGAAGCCAGCGGAGGCCAGAGCCTTCCTCTCCATCACAGAGGCGCCCTATTTCACCGCTGAGCCCAGGAGGAAGATGATGGGAGAGGTGGACAAAAGTTTGGATATCCAGTGCCAAGCTCGAGGGGTGCCCATGCCCAAGCTGGAGTGGTATAAAGATGCTGTGCCCCTCAGTAAACTCAACAACCCTCGCTACAAGGTCATCTCCAGCATGGGCCTTCAGGTCAGGAAGGTACAGCCCAGCGATGCCGGAATCTTCCAATGCTTTGCCAGGAACTCGGCTGGAGAAGCTCAGGTCCACACTTATCTGGACGTCACGAGT

Function

symbol description
sdk1a Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in synapse. Is expressed in ciliary marginal zone; retinal ganglion cell layer; retinal inner nuclear layer; and retinal outer nuclear layer. Orthologous to human SDK1 (sidekick cell adhesion molecule 1).
sdk1 Predicted to enable identical protein binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to act upstream of or within behavioral response to cocaine and regulation of dendritic spine development. Predicted to be located in plasma membrane. Predicted to be active in synapse.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K16353 SDK; protein sidekick

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03347042_03438271.mRNA True 1062 mRNA 0.56 8 3347042 3438271

Neighbor

gene id symbol gene type direction distance location
CI01000046_03205894_03253907 NA coding upstream 92712 3205592 ~ 3254330 (+)
CI01000046_03138487_03139142 NA coding upstream 207351 3138487 ~ 3140879 (+)
CI01000046_03046400_03047689 NA coding upstream 298610 3045779 ~ 3048432 (+)
CI01000046_03041320_03042564 GRIFIN coding upstream 304292 3041320 ~ 3042750 (+)
CI01000046_02981176_03006650 NA coding upstream 340367 2980827 ~ 3006675 (+)
CI01000046_03443490_03508344 SDK1, SDK1A coding downstream 5006 3443277 ~ 3508481 (+)
CI01000046_03511698_03542614 SDK1, SDK1A coding downstream 73134 3511405 ~ 3542844 (+)
CI01000046_03544999_03551574 CYP3C4 coding downstream 106728 3544999 ~ 3551897 (+)
CI01000046_03556534_03559710 CYP3C1, CYP3C2, CYP3C3, CYP3C4 coding downstream 117935 3556206 ~ 3559837 (+)
CI01000046_03572743_03591418 FOXK1 coding downstream 132472 3570743 ~ 3591453 (+)
G196784 NA non-coding upstream 262922 3082933 ~ 3084120 (+)
G196809 NA non-coding upstream 303560 3043191 ~ 3043482 (+)
G196780 NA non-coding upstream 323649 3023159 ~ 3023393 (+)
G196975 NA non-coding downstream 124226 3562497 ~ 3563548 (+)
G196885 NA non-coding downstream 184441 3622712 ~ 3642563 (+)
G196857 NA non-coding downstream 200638 3638909 ~ 3641270 (+)
G196846 NA non-coding downstream 205912 3644183 ~ 3644698 (+)
G196994 NA non-coding downstream 333571 3771842 ~ 3772078 (+)
G196936 NA other upstream 152771 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 889762 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1387894 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 1783705 1539494 ~ 1668012 (+)
G195003 NA other upstream 2185352 1161157 ~ 1161690 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 505557 3943794 ~ 3945500 (+)
G197055 NA other downstream 711152 4149423 ~ 4149780 (+)
G197121 NA other downstream 932740 4371011 ~ 4371430 (+)
G196869 NA other downstream 977259 4415530 ~ 4421687 (+)
G197352 NA other downstream 1836111 5259318 ~ 5276453 (+)

Expression


Co-expression Network