CI01000046_03544999_03551574 (CYP3C4)


Basic Information

Item Value
gene id CI01000046_03544999_03551574
gene name CYP3C4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3544999 ~ 3551897 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03544999_03551574.mRNA
ATGATTGACTTCTCATCTCTGTCTGTGACCTGGACCCTGGTGGTTCTGGTCATAACTCTCCTGTTTATTTACGGTGTTTGGCCACATGGATTTTTCAACAAACTGGGAATTCCAGGACCAAGACCTTGGCCTTTCGTTGGCACATTTCTCTCATACTCTAAAGGTTTGTTTAATTTTGATATGGAGTGTGCTAAGAAGTATGGAAAAGTTTGGGGGATTTATGATGGAAGACTCCCAATATTAATGGTCACTGACCTGGAAATGATCAAAACAATTATGGTGAAAGATTGTTATTCTACCTTCACTAACAGAAGAATATTTCCCATAGCTGTGACACATGCAGATCGTTTTATTAAAAACATGCAAAAGCGAGACCACGAGCAGCCAGTTAAAACAAAAGAAGTTGTCGCTCCATATAGTTTGGATGTCGTCACCAGCTCCTCCTTTAGCGTTGACATCGACTCCATAAACAACCCGGATGATCCTTTCGTTACTAACATCAAGAAGTTTTTCCAGTTCAGTCTGTTCAGTCCTCTCATTCTGCTTTTAACTTTATTTCCCTCCATTGCAAATCTTTTGGGAAAAATGGGGATAAGTCTTTTTTCAAGGTCGTCTATGGATTTTTTCTACAATACCTTGAGAAAGATTAAGGACGAGCACAACAAGAAACCAGATGGTCGAGTAGATTTTCTCAAGCTCATGATCCAGAATCAAATACCTGATGATCAAGCTAAGGACGATACAAGTGACCAGCCAGCAAAAGGGCTAACAGATCATGAGATTCTCTCACAGTCCTTCGTTTTCATCCTCGGAGGTTATGAAACTACAAGCTCCACTCTCACTTTCCTCCTCTATAATCTTGCGACTAATCCAGACTCCCTGGAAAAGCTGGTTGAGGAGATTGACACAAACTTCCCTCCTGATCTCTGGGATTCTCCTGATGAGTTCAGGCCGGAGAGGTTCAGCCCAGAGAGTAAATCAGAGATTAACCAGTACGCTTTCATGCCTTTTGGACTCGGGCCTCGGAATTGCATTGGAATGAGATTTGCCCTAATGATCATGAAACTGCTTGTTGTGAAGCTTCTTCAGAACTTCACTGTGGAAACATGTAAAGAGACACAGATCCCTCTAGAGATGAATGTTATTTTTCAGCCGAAGGTTCCCATCACACTGAAGTTTATTCCAAGACCTCACAAGGAAAAACAATAATTAAAATACTGATCATTTCAACATAATTGCGTAGATGTTATACAAGTTATATAGTATAAGAAAAACTGCATACAGTATAGTTTCATTTTAAAAATATCATAGATATATTTACTGCCTTTTTTTTTTTTTTTACATGCTTTTAGATTTATGGTGCTCATGGTTTGCTGGGCCTTGACCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCTCTGCAGGTTCAGCCCAGAGA

Function

symbol description
cyp3c4 Predicted to enable steroid hydroxylase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gill; heart; liver; nervous system; and pleuroperitoneal region.

GO:

id name namespace
GO:0004497 monooxygenase activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03544999_03551574.mRNA True 1532 mRNA 0.37 12 3544999 3551897

Neighbor

gene id symbol gene type direction distance location
CI01000046_03511698_03542614 SDK1, SDK1A coding upstream 2155 3511405 ~ 3542844 (+)
CI01000046_03443490_03508344 SDK1, SDK1A coding upstream 36518 3443277 ~ 3508481 (+)
CI01000046_03347042_03438271 SDK1, SDK1A coding upstream 106728 3347042 ~ 3438271 (+)
CI01000046_03205894_03253907 NA coding upstream 290669 3205592 ~ 3254330 (+)
CI01000046_03138487_03139142 NA coding upstream 405308 3138487 ~ 3140879 (+)
CI01000046_03556534_03559710 CYP3C1, CYP3C2, CYP3C3, CYP3C4 coding downstream 4309 3556206 ~ 3559837 (+)
CI01000046_03572743_03591418 FOXK1 coding downstream 18846 3570743 ~ 3591453 (+)
CI01000046_03596032_03605678 AP5Z1 coding downstream 43571 3595468 ~ 3605846 (+)
CI01000046_03624314_03633087 WIPI2 coding downstream 72417 3624314 ~ 3633201 (+)
CI01000046_03680288_03699097 SMURF1 coding downstream 128391 3680288 ~ 3699097 (+)
G196784 NA non-coding upstream 460879 3082933 ~ 3084120 (+)
G196809 NA non-coding upstream 501517 3043191 ~ 3043482 (+)
G196780 NA non-coding upstream 521606 3023159 ~ 3023393 (+)
G196975 NA non-coding downstream 10600 3562497 ~ 3563548 (+)
G196885 NA non-coding downstream 70815 3622712 ~ 3642563 (+)
G196857 NA non-coding downstream 87012 3638909 ~ 3641270 (+)
G196846 NA non-coding downstream 92286 3644183 ~ 3644698 (+)
G196994 NA non-coding downstream 219945 3771842 ~ 3772078 (+)
G196936 NA other upstream 350728 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1087719 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1585851 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 1981662 1539494 ~ 1668012 (+)
G195003 NA other upstream 2383309 1161157 ~ 1161690 (+)
CI01000046_03943890_03945302 ATP5J2 other downstream 391931 3943794 ~ 3945500 (+)
G197055 NA other downstream 597526 4149423 ~ 4149780 (+)
G197121 NA other downstream 819114 4371011 ~ 4371430 (+)
G196869 NA other downstream 863633 4415530 ~ 4421687 (+)
G197352 NA other downstream 1722485 5259318 ~ 5276453 (+)

Expression


Co-expression Network