XLOC_009366 (CR855389.2)



Basic Information


Item Value
gene id XLOC_009366
gene name CR855389.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 32633290 ~ 32635777 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00018405
TAAAGAAATACATGTAGGAGGAGGAGACACGGGGGAGGGCCTCCCGTCTCCTTAAGCTCTCCTCGTGGGACAACTCCTTCCCATGGTAATCACAAATAATTTCTCCTTTTTTAAAGGGCATGGTGGTGACGACTCCTCCGCCTTTGTCCCCAACGGTCTGGATCTCCAGTCCTTTCCAAGACTGCTGGACCACCGACATGACCAGCTGCTGGTCACTGGTGACGGCGGACAGCGCCCTCGAGAGCTCTCACTCTGCCAGGACGCCGTCCACCGTCGGCCCCGCACCTCCGCCAGGCCTACCACCCTCCCCTCTGTGACAAACCTGGCGCGCGACTCCAAGGCACGAGCCACCTCCTCCAGGACCAGAGCCTCCTCAGCGCCGCTCATGCAGACCTGCCTCAAGTGCCCTGAGAGGTCCTCCTGAACCGTCAGGCACCCGAGGCAGTGTACAGCAACGCTATGGTCAGTGTTGTCCATCGTCGTTTCGAAATAGTTACCTCAGGTCGACACGGTGGGCGGAGTCGTaagcatattttttaaatcatttattgttttcaatttatttcatacttgtattactattattttattagtattaatgttttaacttattgtaataagtgaagatacagataaagacagtatttggattttgacaatcattttattgctggaaaatgtgtaaatctgtaaaaatgctattgaataaactcaatgaaacggaaaa
>TCONS_00019206
cacacaggtttacagctcaacctctaaagtcccatatctggctgaggagactgtggatcatccagaacatcaccagtggaaaaaaggtgtgaatgcatcctcaaagcccctaagtgagggagtacatggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccaccttatgaatctacactagttacattaacatttagcagactcttttgtcttaagtgacttacaattgaggacacattcagcaaatcaacaagaaaaggcgatacacccaagatgtgctaattatataaaaaaaaaaaagtggctggCGACTTGCGACTTGCGCGCCCAGTCGTCCAGCCAATCTAAGTTTTTGCCTTCTCCTCGGAAGGACCCCCGTCTAACGCCGTAGTCCAGCAGCAGCTCCTCCCCCATGGAGATGTCCCGAAGGGCGCGGAATAGAACGCACTCCCGTGGCCCCTGTGGCAGCGTTAGAAGCTTCACAAAGGGCCACACGTTGTTGCGGTGCCGGGAGTGGTTCATAAGCCTTCCGAAGGTTTCCATGCCCGGGTGACAGGGGCAGGGCCAGGACTGGGCATCCAGGCAAAGGGTCATCCCACCAAGCCCTTTAAAGAAATACATGTAGGAGGAGGAGACACGGGGGAGGGCCTCCCGTCTCCTTAAGCTCTCCTCGTGGGACAACTCCTTCCCATGGTAATCACAAATAATTTCTCCTTTTTTAAAGGGCATGGTGGTGACGACTCCTCCGCCTTTGTCCCCAACGGTCTGGATCTCCAGTCCTTTCCAAGACTGCTGGACCACCGACATGACCAGCTGCTGGTCACTGGTGACGGCGGACAGCGCCCTCGAGAGCTCTCACTCTGCCAGGACGCCGTCCACCGTCGGCCCCGCACCTCCGCCAGGCCTACCACCCTCCCCTCTGTGACAAACCTGGCGCGCGACTCCAAGGCACGAGCCACCTCCTCCAGGACCAGAGCCTCCTCAGCGCCGCTCATGCAGACCTGCCTCAAGTGCCCTGAGAGGTCCTCCTGAACCGTCAGGCACCCGAGGCAGTGTACAGCAACGCTATGGTCAGTGTTGTCCATCGTCGTTTCGAAATAGTTACCTCAGGTCGACACGGTGGGCGGAGTCGTaagcatattttttaaatcatttattgttttcaatttatttcatacttgtattactattattttattagtattaatgttttaacttattgtaataagtgaagatacagataaagacagtatttggattttgacaatcattttattgctggaaaatgtgtaaatctgtaaaaatgctattgaataaactcaatgaaacggaaaa
>TCONS_00018406
cacacaggtttacagctcaacctctaaagtcccatatctggctgaggagactgtggatcatccagaacatcaccagtggaaaaaaggtgtgaatgcatcctcaaagcccctaagtgagggagtacatggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccaccttatgaatctacactagttacattaacatttagcagactcttttgtcttaagtgacttacaattgaggacacattcagcaaatcaacaagaaaaggcgatacacccaagatgtgctaattatataaaaaaaaaaaagtggctggCGACTTGCGACTTGCGCGCCCAGTCGTCCAGCCAATCTAAGTTTTTGCCTTCTCCTCGGAAGGACCCCCGTCTAACGCCGTAGTCCAGCAGCAGCTCCTCCCCCATGGAGATGTCCCGAAGGGCGCGGAATAGAACGCACTCCCGTGGCCCCTGTGGCAGCGTTAGAAGCTTCACAAAGGGCCACACGTTGTTGCGGTGCCGGGAGTGGTTCATAAGCCTTCCGAAGGTTTCCATGCCCGGGTGACAGGGGCAGGGCCAGGACTGGGCATCCAGGCAAAGGGTCATCCCACCAAGCCCTTTAAAGAAATACATGTAGGAGGAGGAGACACGGGGGAGGGCCTCCCGTCTCCTTAAGCTCTCCTCGTGGGACAACTCCTTCCCATGGTAATCACAAATAATTTCTCCTTTTTTAAAGGGCATG
>TCONS_00018407
cacacaggtttacagctcaacctctaaagtcccatatctggctgaggagactgtggatcatccaggtactatgcctttagatgcctatacacacattaaaatgatgtacagtaaaaattactagtaattttaactactaattatttagtaaattactaattgtcatttcatgttatttagaacatcaccagtggaaaaaaggtgtgaatgcatcctcaaagcccctaagtgagggagtacatggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccaccttatgaatctacactagttacattaacatttagcagactcttttgtcttaagtgacttacaattgaggacacattcagcaaatcaacaagaaaaggcgatacacccaagatgtgctaattatataaaaaaaaaaaagtggctggCGACTTGCGACTTGCGCGCCCAGTCGTCCAGCCAATCTAAGTTTTTGCCTTCTCCTCGGAAGGACCCCCGTCTAACGCCGTAGTCCAGCAGCAGCTCCTCCCCCATGGAGATGTCCCGAAGGGCGCGGAATAGAACGCACTCCCGTGGCCCCTGTGGCAGCGTT

Function


GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0038092 nodal signaling pathway biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0001570 vasculogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003260 cardioblast migration biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0007389 pattern specification process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0060026 convergent extension biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0009790 embryo development biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104489

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00018405 False 727 lncRNA 0.49 2 32633290 32634932
TCONS_00019206 False 1344 lncRNA 0.50 4 32633290 32635777
TCONS_00018406 False 739 lncRNA 0.51 3 32634811 32635777
TCONS_00018407 True 596 lncRNA 0.44 2 32635069 32635777

Neighbor


gene id symbol gene type direction distance location
XLOC_009365 frem2b coding downstream 37135 32436907 ~ 32596155 (-)
XLOC_009364 NA coding downstream 199617 32413314 ~ 32433673 (-)
XLOC_009363 c4 coding downstream 249761 32351886 ~ 32383529 (-)
XLOC_009362 CR388091.1 coding downstream 569881 32063292 ~ 32063409 (-)
XLOC_009361 hsph1 coding downstream 1045128 31564137 ~ 31588162 (-)
XLOC_009367 NA coding upstream 177959 32813736 ~ 32817995 (-)
XLOC_009368 nbeab coding upstream 259882 32895659 ~ 33325046 (-)
XLOC_009369 stard13b coding upstream 831521 33467298 ~ 33640890 (-)
XLOC_009370 CT027778.1 coding upstream 1027278 33663055 ~ 33663172 (-)
XLOC_009371 NA coding upstream 1030147 33665924 ~ 33681678 (-)
XLOC_009360 AL929092.1 non-coding downstream 1085438 31547734 ~ 31547852 (-)
XLOC_009348 AL845428.2 non-coding downstream 1271149 31361787 ~ 31362141 (-)
XLOC_009344 AL928851.1 non-coding downstream 1317742 31315209 ~ 31315548 (-)
XLOC_009376 CR855379.2 non-coding upstream 1232884 33868661 ~ 33887667 (-)
XLOC_009377 NA non-coding upstream 1233802 33869579 ~ 33877331 (-)

Expression



Co-expression Network