CI01000046_03887074_03887701


Basic Information

Item Value
gene id CI01000046_03887074_03887701
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3886910 ~ 3888039 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03887074_03887701.mRNA
ATATAAAAACGCGAAGATATGAACAGCATTGTTTACAAGACGCTAGAAAAGTTAGAAAGCGACCTTATGCTTTTCACTTTAAAAATAAAAAATAAAATTCTGCTTTCTGAAAGGAGGAAAATTAAAACTGAACTTACTATGGTGAGAATGTAGGTTCATGGCCGATGAAAGAAATTTTCCAGTGTGTAGAGCCGCCGGGTGCCCCGCGCCCAGATGACCGGGAGACGGTGGTATTCTGCCGGCTGCAGCGGCCGCGCCGAGTCGGTGAGACTCCATGGGCAGCCCCGAGAGAAGGGGCGGCGGATAAACAGACGGTAATCTGCATGCAGGCAGTATGTTGGGCGAAAATCCATCCTTTTGGTGGGGACTTGACCGATCATTCGCGCATAAAGTGACCTATAGGCTCATTCAAACGGTTTACAAACACATTTATATTCTTCGAAGGCTGTTTATAAACGGTCAAGAACAGTCCGTTTATGTTTAAACGCGCGACGTGCACGAAATAGTAAAAACAAAATATTTCTAGAAAACGGACGTATGTAACAACCACCATTTGCGAATGACTGATATCGATTTTGCTAAACTAAACATATTAATGATTGAAAAACAATATTATTTTCTTTTTTGCTTCTTGTAAGCTACTACCTTTCAACGGACTGTTATTGACCTCTGCCGAACCGTTCGTCTGAAAACAAACCCAGTTTATCCACTCCAAATGGGCTGCTACGGCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03887074_03887701.mRNA True 733 mRNA 0.43 2 3886910 3888039

Neighbor

gene id symbol gene type direction distance location
CI01000046_03794654_03799486 ACTG1, ACTL9, ACTB2, ACTB1, ACTB, ACTBB coding upstream 86884 3793720 ~ 3800026 (+)
CI01000046_03721265_03754551 RNF216 coding upstream 132129 3720682 ~ 3754781 (+)
CI01000046_03712603_03713730 NA coding upstream 172719 3712472 ~ 3714191 (+)
CI01000046_03680288_03699097 SMURF1 coding upstream 187813 3680288 ~ 3699097 (+)
CI01000046_03624314_03633087 WIPI2 coding upstream 253709 3624314 ~ 3633201 (+)
CI01000046_03943890_03945302 ATP5J2 coding downstream 55755 3943794 ~ 3945500 (+)
CI01000046_03953528_03957334 PDAP1B, PDAP1 coding downstream 65066 3953105 ~ 3957695 (+)
CI01000046_03959320_03963204 SHMT1 coding downstream 70509 3958548 ~ 3963204 (+)
CI01000046_03964744_03965521 SHMT1 coding downstream 76705 3964744 ~ 3965543 (+)
CI01000046_03971520_03980002 TOP3A coding downstream 83481 3971520 ~ 3980102 (+)
G196994 NA non-coding upstream 114832 3771842 ~ 3772078 (+)
G196846 NA non-coding upstream 242212 3644183 ~ 3644698 (+)
G196885 NA non-coding upstream 244347 3622712 ~ 3642563 (+)
G196857 NA non-coding upstream 245640 3638909 ~ 3641270 (+)
G196975 NA non-coding upstream 323362 3562497 ~ 3563548 (+)
G196887 NA non-coding downstream 2981 3891020 ~ 3891841 (+)
G197024 NA non-coding downstream 26545 3914584 ~ 3914837 (+)
G197039 NA non-coding downstream 62546 3950585 ~ 3950828 (+)
G196871 NA non-coding downstream 237959 4125998 ~ 4126444 (+)
G196867 NA non-coding downstream 238838 4126877 ~ 4127188 (+)
G196936 NA other upstream 692639 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1429630 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1927762 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 2323573 1539494 ~ 1668012 (+)
G195003 NA other upstream 2725220 1161157 ~ 1161690 (+)
G197055 NA other downstream 261384 4149423 ~ 4149780 (+)
G197121 NA other downstream 482972 4371011 ~ 4371430 (+)
G196869 NA other downstream 527491 4415530 ~ 4421687 (+)
G197352 NA other downstream 1386343 5259318 ~ 5276453 (+)

Expression


Co-expression Network