CI01000046_03943890_03945302 (ATP5J2)


Basic Information

Item Value
gene id CI01000046_03943890_03945302
gene name ATP5J2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3943794 ~ 3945500 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03943890_03945302.mRNA
ATATATAAACCCCGCCCCACATTTTGCCCGTTGACGTCACTCCATTTTACTCCCAGCGTACCCTGCTGCAGCCATCATCTTGAAGTTCAGAGCAAGATGGCGGATAAACCAGTTGCCCTGGCCCAGAAGAGGCTTTTGGATGTCAAGCTTGGTCAACTGCCATCATGGCTCGGAACAAGAGACTTCACCCCGAACGGACTTATTGGTGGAGTTCGTGGAGGCTATGAGAGATATTACAACAAATACATCAATGTGAAGAAAGGAGGTATTGGTGGAGTTGCCATGTTCCTTGCTGGTTACATTGCCCTGAGCTACCTCTGGGAATACGATCACATCAAGCACGACAGGTGGAGGAAGTACCACTAAAACAAATCTTTCGTCTGCAGCAGTGTCGCCACACCTCTCAGCTTTCTGTGTTTGACTCTTGTGACCAAGA
>TU223494
CGTCACTCCATTTTACTCCCAGCGTACCCTGCTGCAGCCATCATCTTGAAGTTCAGAGCAAGATGGCGGATAAACCAGTTGCCCTGGCCCAGAAGAGGCTTTTGGATGTCAAGCTTGGTCAACTGCCATCATGGCTCGGAACAAGAGACTTCACCCCGAACGGACTTATTGGTGGAGTTCGTGGAGGCTATGAGAGATATTACAACAAATACATCAATGTGAAGAAAGGAGGTATTGGTGGAGTTGCCATGTTCCTTGCTGGTTACATTGCCCTGAGCTACCTCTGGGAATACGATCACATCAAGCACGACAGGTGGAGGAAGTACCACTAAAACAAATCTTTCGTCTGCAGCAGTGTCGCCACACCTCTCAGCTTTCTGTGTTTGACTCTTGTGACCAAGAATAAAATGACATTTATTTAATTTGGACTCTTTATTGAAAGCATACAAAAGTGTAGGCTGTATGTACAAGAGCTTGATTATTATTCATATTTCTTGTGATTAATTAAACATGTATTATATTGATTGGGA

Function

symbol description
atp5j2 Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and skeleton. Orthologous to human ATP5MF (ATP synthase membrane subunit f).

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG:

id description
K02130 ATPeF0F, ATP5J2; F-type H+-transporting ATPase subunit f

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03943890_03945302.mRNA False 436 mRNA 0.49 4 3943794 3945372
TU223494 True 530 TUCP 0.43 4 3943828 3945500

Neighbor

gene id symbol gene type direction distance location
CI01000046_03887074_03887701 NA coding upstream 55755 3886910 ~ 3888039 (+)
CI01000046_03794654_03799486 ACTG1, ACTL9, ACTB2, ACTB1, ACTB, ACTBB coding upstream 143768 3793720 ~ 3800026 (+)
CI01000046_03721265_03754551 RNF216 coding upstream 189013 3720682 ~ 3754781 (+)
CI01000046_03712603_03713730 NA coding upstream 229603 3712472 ~ 3714191 (+)
CI01000046_03680288_03699097 SMURF1 coding upstream 244697 3680288 ~ 3699097 (+)
CI01000046_03953528_03957334 PDAP1B, PDAP1 coding downstream 7733 3953105 ~ 3957695 (+)
CI01000046_03959320_03963204 SHMT1 coding downstream 13176 3958548 ~ 3963204 (+)
CI01000046_03964744_03965521 SHMT1 coding downstream 19372 3964744 ~ 3965543 (+)
CI01000046_03971520_03980002 TOP3A coding downstream 26148 3971520 ~ 3980102 (+)
CI01000046_03982069_03996142 FLII, FLII.S coding downstream 36697 3982069 ~ 3997163 (+)
G197024 NA non-coding upstream 28957 3914584 ~ 3914837 (+)
G196887 NA non-coding upstream 51953 3891020 ~ 3891841 (+)
G196994 NA non-coding upstream 171716 3771842 ~ 3772078 (+)
G196846 NA non-coding upstream 299096 3644183 ~ 3644698 (+)
G196885 NA non-coding upstream 301231 3622712 ~ 3642563 (+)
G197039 NA non-coding downstream 5213 3950585 ~ 3950828 (+)
G196871 NA non-coding downstream 180626 4125998 ~ 4126444 (+)
G196867 NA non-coding downstream 181505 4126877 ~ 4127188 (+)
G197051 NA non-coding downstream 182241 4127613 ~ 4128009 (+)
G196870 NA non-coding downstream 183133 4128505 ~ 4128795 (+)
G196936 NA other upstream 749523 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1486514 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1984646 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 2380457 1539494 ~ 1668012 (+)
G195003 NA other upstream 2782104 1161157 ~ 1161690 (+)
G197055 NA other downstream 204051 4149423 ~ 4149780 (+)
G197121 NA other downstream 425639 4371011 ~ 4371430 (+)
G196869 NA other downstream 470158 4415530 ~ 4421687 (+)
G197352 NA other downstream 1329010 5259318 ~ 5276453 (+)
G197528 NA other downstream 1780749 5726121 ~ 5742684 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026665 atp5mf coding NC_007114.7 CM002887.2 40296785 ~ 40301467 (-)