CI01000046_03953528_03957334 (PDAP1B, PDAP1)


Basic Information

Item Value
gene id CI01000046_03953528_03957334
gene name PDAP1B, PDAP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3953105 ~ 3957695 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03953528_03957334.mRNA
CAATTAAAACCACGTACAATTAATTACTGCCATTTTGTACCTACAGTATTGGTTACACGAGAGTGTGGTGAAGTGAGGCAACCTGATATCATAACTACTAAGCTTTTGTTGGGACTGGGACTGAGTCGTTTTTTATTTTATTTTTTATTTTTTATATCAAGTTAAGTTTAGTCTTCATCATGCCTAAAGGAGGTAAGAGATCATTTAGTTTTTAGTGTGATTACTGATTGAGTACATCATGAACTGGTGCTGCTGTTTATAGTCTGTTTTTATGATTGACATTATATACAGTCGGTATTTTGTACTTTTTAAACAAAGTATTCTGTTTTATCTGGATATTTTTTTCACTGAGAACAATACTACTGGAAAGTCACATACTTTTTTGTGCTTATTTTAGGGAAAAAAGGTGGCCATAAAGGTCGCATGAGAACCTACACAAGTCCTGAAGAAATAGATGCTCAAATGAAAGAAGAAAAAGAAAGAAAAAAGAATGAAGAAGAAGAAGGTGCAGCAGTGAACGACAACCAGAGTGAGGACAAACTGACAGCATCAGGCTCAGAAGACAGTGACGACGATGGGTCTCAGAAAAGGAAGGGTGTTGAGGGATTGATAGAGATTGAAAATCCTAATCGAGTTGCCCAAAAAACAAAGAAAGTCACAGAGATAGAACTTGAGGGTCCCAAACAGCTTTCCAGAAGAGAAAGAGAAGAGATTGAAAAGCAAAAGGCCAAGGAGAGGTATATGAAAATGCATTTAGCAGGAAAGACAGATCAAGCTAAAGCTGACCTCGCTCGACTCGCCATTATTAGAAAACAACGGGAGGAGGCGGCACGGAAAAAAGAAGAGGAACGTAAAGCAAAAGATGCAGCGGCGGCGGCAGCAGCAGCGGCTAAAGGACTACACACGTTGTCACTTAAATAATCCGAATATTGGATTCTTAGAGGTTTTAATGCATTTGTGGACAGTATACAATTATATTGACAATGTTATTTTTGAAGACAACGCAAAAGATGATGCGGTATGCTATGTAAGATGATATAAAACTATGTTCCATTGAAAAGGAATATTTCAGAGTATATTAACCCAGAAACAGGCATTTAATTGTCCGAAAAAAATGCCTTTGTGAAAGTGCTGATGCTTTCACTAAAGTGGCTAAACAAATCTTAATGCTTGCTTTCACTCAGTGATATTAGAAATATAGACATATTTATTAATATATTAACATATTGCCACATGTAACTGAGTGGACTTGGCTGTCTCAGTTTAAAGGATCACTGTAAGA

Function

symbol description
pdap1b Predicted to be active in cytosol. Is expressed in axis; lens; myotome; polster; and solid lens vesicle. Orthologous to human PDAP1 (PDGFA associated protein 1).
pdap1 Enables RNA binding activity. Predicted to be involved in signal transduction. Located in cytosol and plasma membrane. Biomarker of high grade glioma.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03953528_03957334.mRNA True 1282 mRNA 0.37 5 3953105 3957695

Neighbor

gene id symbol gene type direction distance location
CI01000046_03943890_03945302 ATP5J2 coding upstream 7733 3943794 ~ 3945500 (+)
CI01000046_03887074_03887701 NA coding upstream 65066 3886910 ~ 3888039 (+)
CI01000046_03794654_03799486 ACTG1, ACTL9, ACTB2, ACTB1, ACTB, ACTBB coding upstream 153079 3793720 ~ 3800026 (+)
CI01000046_03721265_03754551 RNF216 coding upstream 198324 3720682 ~ 3754781 (+)
CI01000046_03712603_03713730 NA coding upstream 238914 3712472 ~ 3714191 (+)
CI01000046_03959320_03963204 SHMT1 coding downstream 853 3958548 ~ 3963204 (+)
CI01000046_03964744_03965521 SHMT1 coding downstream 7049 3964744 ~ 3965543 (+)
CI01000046_03971520_03980002 TOP3A coding downstream 13825 3971520 ~ 3980102 (+)
CI01000046_03982069_03996142 FLII, FLII.S coding downstream 24374 3982069 ~ 3997163 (+)
CI01000046_03998572_04009276 ZNF598 coding downstream 40877 3998572 ~ 4010216 (+)
G197039 NA non-coding upstream 2277 3950585 ~ 3950828 (+)
G197024 NA non-coding upstream 38268 3914584 ~ 3914837 (+)
G196887 NA non-coding upstream 61264 3891020 ~ 3891841 (+)
G196994 NA non-coding upstream 181027 3771842 ~ 3772078 (+)
G196846 NA non-coding upstream 308407 3644183 ~ 3644698 (+)
G196871 NA non-coding downstream 168303 4125998 ~ 4126444 (+)
G196867 NA non-coding downstream 169182 4126877 ~ 4127188 (+)
G197051 NA non-coding downstream 169918 4127613 ~ 4128009 (+)
G196870 NA non-coding downstream 170810 4128505 ~ 4128795 (+)
G197052 NA non-coding downstream 176593 4134288 ~ 4137233 (+)
G196936 NA other upstream 758834 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1495825 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 1993957 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 2389768 1539494 ~ 1668012 (+)
G197055 NA other downstream 191728 4149423 ~ 4149780 (+)
G197121 NA other downstream 413316 4371011 ~ 4371430 (+)
G196869 NA other downstream 457835 4415530 ~ 4421687 (+)
G197352 NA other downstream 1316687 5259318 ~ 5276453 (+)
G197528 NA other downstream 1768426 5726121 ~ 5742684 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026664 pdap1b coding NC_007114.7 CM002887.2 40277704 ~ 40284744 (-)