CI01000046_03971520_03980002 (TOP3A)


Basic Information

Item Value
gene id CI01000046_03971520_03980002
gene name TOP3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3971520 ~ 3980102 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03971520_03980002.mRNA
ATGATAAGACGCACTCAGATTAAGAAAGTGCTTTGTGTTGCTGAGAAAAACGACGCCGCTAAGGGCATAGCAGAGATCATGTCAAATGGGAGATCGAGAAGAAGAGAAGGCTACTCTGTCTACAACAAAATATATGAGTATGAATACAACCTGTTTGGGCAAAATGTAACTGTAAACATGACATCAGTATCAGGGCATCTCTTGGGTCTTGAATTCAAAGCTCCTTTTCAGAAATGGCATAGTTGTAATCCAGTCCTGTTGTTTGATGCTGAGGTGGAAAAGTACTGCCCTGAAAACTTTATACCAATCAAGAGGACTTTGGAGAGAGAAGTAAGACAGTGTCAAGCTCTGGTCATTTGGACTGATTGTGACCGAGAAGGAGAGAATATCGGCTTTGAGATCATTGATGTCTGCAAAGCAGTGAAGCCAAACATTCAGGTCTTCCGTGCACGGTTCTCTGAGATCACCCCAAACTCCATAAGGAGAGCCTGTGAAACCCTCACTGAGCCGAATATCAACATCAGTGATGCTGTGGATGTGAGACAGGAGCTTGATCTCCGCATCGGAGCATCGTTTACTAGGTTCCAGACATTACGCTTGCAGAAGATATTCCCAGAATCTCTCTCCGATCAGCTCATCAGTTATGGCAGTTGTCAGTTTCCAACCCTTGGCTTTGTAGTCGAGCGGTTTAAAGCAATTCAAGCCTTCGTCCCTGAAACTTTCTTTAAAATCAAAGTTGTCCATGAGCCTAACGAAGAGGAATCAGTAGAATTCGGCTGGAAGAGACATCGTCTTTTCAACCACACAGCATGCCTTGTGCTGTATCAGATGTGCATGCAGGATCCCACAGCAAAAGTGATATCTGTAACAAGTAAACCAAAAAGCAAATGGCGACCTTTACCCCTTGACACTGTGGAACTTGAAAAACTGGCTTCAAGAAAATTGAGGATAAGTGCCAAAGAAACCATGAAAACCGCAGAAAAGCTGTACACTCAAGGGTTTATCAGTTATCCTCGCACTGAGACCAACATGTTTCCACAGAACCTGAACCTTACCCTGCTGGTTGAGCAACAGACACAAGATAATGAATGGGGAAATTTTGCTCAGCGCATTTTGGAAAGCGGTGGGCCCACACCTCGAAATGGAAACAAATCAGATCAGGCCCATCCTCCCATTCACCCCACCAAATACACCAACAGTTTACAGGGAAATGAAAAACGGCTGTATGAATTCATTGTACGGCACTTTCTGGCCTGTTGCTCCAAAGATGCCCAGGGTCAAGAGGTGACGGTTGAAATTGAAATAGCTGAAGAGCGATTCTCTGCTAGTGGATTGACGATCATTGCGCGCAATTATCTGGAAGTGTACCCTTATGACAAGTGGTACAATAAGGTAATTCCATTATATAGACCTGACACCACGTTCCAGCCCACAGCGATTGAGATGGTGGAAGGACAGACCAGTCCACCACAGCTTCTGACAGAGGCCGATTTGATATCGCTCATGGAGAAGCATGGCATTGGTACTGATGCAACACATGCTGAACACATTGAGACCATAAAGAGTCGTATGTACGTGGGGCTGACGGCTGACCAGAGGTTCCTTCCTGGAGAGCTCGGCATGGGTCTTGTTGAAGGGTATAACTCAATGGGGTATGAGATGTCTAAACCAGACCTGAGAGCGGAGCTGGAGGCCGATCTTAAACTTGTGTCAGAGGGCCGAAAGGACAAAGCTTCTGTCCTCAGATATCACGTGGCAAAATACAAAGCTGTTTTTATTGAATCCGTGAGGAAGGCAAAGAAATTGGATGAAGCCTTGTCCAATTATCTGGGCCCGGCTCAGGAGATTACCGAACAGGAGCAGGGAGAGATGGAGATACCATTACCTGTGCGAAAATGTCCACAGTGTAACCGTGACATGGTGCTGAAGAAGAAGAAAGACAGTACAGGGATGTTTCTTTCATGTATGGGATATCCAGCTTGTAAAGCAGCCGTGTGGTTTCCAGACACAGTTTTGGAGGTCAGCAGAGATGAGAGCATCTGTTCAACGTGCCGTCCGCATCCGGTGCATATGCTGAAGTTTAAATTCAAGAGAGGAAGTTTGCCACCTATGATGCCCCTTGAATTTGTTGGCTGCATTGGAGGATGTGATGAGACTCTCAGAGAGGTCTTGAACTTAAAATATCTCAGAGGAGGAGAAGCAGATTCTGGCTCTCGGATTAATAACGGCTCTGGGTCAAATCAGCATCATGTACCTAGAACCAGCTCAGCACCTCCATCCAGGGTGGAGAACGTGAGACCTCCAGCACCCAGACCCCGAGCCGATGGCAACCGCCCCCCAGCCAGTCTGCCACCTCCTCGGGCAGCACAACCACCAGCTTCAGCCCAGGGCGGTGCCATTGTGTGTAACTGTGGTCAGGATGCCCTTCTTCTCACTGTACGCAAAGAGGGTCCCAACCAAGGCCGTCAGTTTTACAAGTGTAACACAGGGGATTGTAAATTCTTCCTGTGGGCTGACCAGCCGGCTGAGCAGGCAGCGCCTGGTGGAAACAGAGGACCCCTAAGTCAGAATTTTCAACCTCCCAGGCCTTCAAATGGCTTTGGGAACATGCCTCAGCAGAGGCAAAACAACAGAGGATCTGGAGGTGATGAAGGTGAAACCATGTGTAACTGTAATGAGCCTGCAGTTACCAGGACTGTCATGAAAGATGGGCCAAACAAGGGCCGAATGTTCCACACCTGTGGGAAACCACGTGATCAGCAGTGTGGGTTCTTCCAGTGGGCAAACGAAAATGTGGCTCCAGCCACAGGTTTTTCTGGGGGAAATGGTGGTAAACATCCTGGGAACAAAAAGGCCGGCGCTGCCCCAAACAAGCCTCCCACTGCCAAAAGGCCGAGGACCTGTGGAATATGTCATGAGCCGGGTCATACCCGGGTCACCTGTCCTCAGGGCCAGTGAGAACAATATTTCCTGCAGTTTTTGTAAAATACAAAATACACATGTAAATGAAATTAATGTTGTCTTATGTATAATTAATGTTTTTTTTTATGTATACATA

Function

symbol description
top3a Predicted to enable DNA topoisomerase activity. Predicted to be involved in DNA topological change. Predicted to be located in chromosome. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 5. Orthologous to human TOP3A (DNA topoisomerase III alpha).

GO:

id name namespace
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K03165 TOP3; DNA topoisomerase III

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03971520_03980002.mRNA True 3058 mRNA 0.47 19 3971520 3980102

Neighbor

gene id symbol gene type direction distance location
CI01000046_03964744_03965521 SHMT1 coding upstream 5977 3964744 ~ 3965543 (+)
CI01000046_03959320_03963204 SHMT1 coding upstream 8316 3958548 ~ 3963204 (+)
CI01000046_03953528_03957334 PDAP1B, PDAP1 coding upstream 13825 3953105 ~ 3957695 (+)
CI01000046_03943890_03945302 ATP5J2 coding upstream 26148 3943794 ~ 3945500 (+)
CI01000046_03887074_03887701 NA coding upstream 83481 3886910 ~ 3888039 (+)
CI01000046_03982069_03996142 FLII, FLII.S coding downstream 1967 3982069 ~ 3997163 (+)
CI01000046_03998572_04009276 ZNF598 coding downstream 18470 3998572 ~ 4010216 (+)
CI01000046_04024795_04028000 DRG2 coding downstream 44449 4024551 ~ 4028000 (+)
CI01000046_04040958_04080846 NA coding downstream 59921 4040023 ~ 4081319 (+)
CI01000046_04081845_04083512 NA coding downstream 101619 4081721 ~ 4083535 (+)
G197039 NA non-coding upstream 20692 3950585 ~ 3950828 (+)
G197024 NA non-coding upstream 56683 3914584 ~ 3914837 (+)
G196887 NA non-coding upstream 79679 3891020 ~ 3891841 (+)
G196994 NA non-coding upstream 199442 3771842 ~ 3772078 (+)
G196846 NA non-coding upstream 326822 3644183 ~ 3644698 (+)
G196871 NA non-coding downstream 145896 4125998 ~ 4126444 (+)
G196867 NA non-coding downstream 146775 4126877 ~ 4127188 (+)
G197051 NA non-coding downstream 147511 4127613 ~ 4128009 (+)
G196870 NA non-coding downstream 148403 4128505 ~ 4128795 (+)
G197052 NA non-coding downstream 154186 4134288 ~ 4137233 (+)
G196936 NA other upstream 777249 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1514240 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 2012372 1865451 ~ 1881369 (+)
CI01000046_01540075_01668012 HS3ST4 other upstream 2408183 1539494 ~ 1668012 (+)
G197055 NA other downstream 169321 4149423 ~ 4149780 (+)
G197121 NA other downstream 390909 4371011 ~ 4371430 (+)
G196869 NA other downstream 435428 4415530 ~ 4421687 (+)
G197352 NA other downstream 1294280 5259318 ~ 5276453 (+)
G197528 NA other downstream 1746019 5726121 ~ 5742684 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location