Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000046_03998572_04009276 |
| gene name | ZNF598 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 3998572 ~ 4010216 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| znf598 | Predicted to enable ribosome binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein monoubiquitination and rescue of stalled ribosome. Predicted to act upstream of or within regulation of translation. Orthologous to human ZNF598 (zinc finger protein 598, E3 ubiquitin ligase). |
| id | name | namespace |
|---|---|---|
| GO:0046872 | metal ion binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000046_03998572_04009276.mRNA | True | 3823 | mRNA | 0.47 | 12 | 3998572 | 4010216 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000046_03982069_03996142 | FLII, FLII.S | coding | upstream | 1409 | 3982069 ~ 3997163 (+) |
| CI01000046_03971520_03980002 | TOP3A | coding | upstream | 18470 | 3971520 ~ 3980102 (+) |
| CI01000046_03964744_03965521 | SHMT1 | coding | upstream | 33029 | 3964744 ~ 3965543 (+) |
| CI01000046_03959320_03963204 | SHMT1 | coding | upstream | 35368 | 3958548 ~ 3963204 (+) |
| CI01000046_03953528_03957334 | PDAP1B, PDAP1 | coding | upstream | 40877 | 3953105 ~ 3957695 (+) |
| CI01000046_04024795_04028000 | DRG2 | coding | downstream | 14335 | 4024551 ~ 4028000 (+) |
| CI01000046_04040958_04080846 | NA | coding | downstream | 29807 | 4040023 ~ 4081319 (+) |
| CI01000046_04081845_04083512 | NA | coding | downstream | 71505 | 4081721 ~ 4083535 (+) |
| CI01000046_04098044_04120141 | LLGL1 | coding | downstream | 86015 | 4096231 ~ 4120352 (+) |
| CI01000046_04274035_04275654 | B9D1 | coding | downstream | 263636 | 4273852 ~ 4275762 (+) |
| G197039 | NA | non-coding | upstream | 47744 | 3950585 ~ 3950828 (+) |
| G197024 | NA | non-coding | upstream | 83735 | 3914584 ~ 3914837 (+) |
| G196887 | NA | non-coding | upstream | 106731 | 3891020 ~ 3891841 (+) |
| G196994 | NA | non-coding | upstream | 226494 | 3771842 ~ 3772078 (+) |
| G196846 | NA | non-coding | upstream | 353874 | 3644183 ~ 3644698 (+) |
| G196871 | NA | non-coding | downstream | 115782 | 4125998 ~ 4126444 (+) |
| G196867 | NA | non-coding | downstream | 116661 | 4126877 ~ 4127188 (+) |
| G197051 | NA | non-coding | downstream | 117397 | 4127613 ~ 4128009 (+) |
| G196870 | NA | non-coding | downstream | 118289 | 4128505 ~ 4128795 (+) |
| G197052 | NA | non-coding | downstream | 124072 | 4134288 ~ 4137233 (+) |
| CI01000046_03943890_03945302 | ATP5J2 | other | upstream | 53072 | 3943794 ~ 3945500 (+) |
| G196936 | NA | other | upstream | 804301 | 3186995 ~ 3194271 (+) |
| CI01000046_02451052_02454565 | MAFK | other | upstream | 1541292 | 2442395 ~ 2457280 (+) |
| CI01000046_01865451_01881353 | NA | other | upstream | 2039424 | 1865451 ~ 1881369 (+) |
| CI01000046_01540075_01668012 | HS3ST4 | other | upstream | 2435235 | 1539494 ~ 1668012 (+) |
| G197055 | NA | other | downstream | 139207 | 4149423 ~ 4149780 (+) |
| G197121 | NA | other | downstream | 360795 | 4371011 ~ 4371430 (+) |
| G196869 | NA | other | downstream | 405314 | 4415530 ~ 4421687 (+) |
| G197352 | NA | other | downstream | 1264166 | 5259318 ~ 5276453 (+) |
| G197528 | NA | other | downstream | 1715905 | 5726121 ~ 5742684 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_026660 | znf598 | coding | NC_007114.7 | CM002887.2 | 40185253 ~ 40202607 (-) |
| bowfin (Amia calva) | AMCG00018503 | znf598 | coding | CM030135.1 | CM030135.1 | 12885187 ~ 12904501 (+) |
