Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000046_04274035_04275654 |
| gene name | B9D1 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 4273852 ~ 4275762 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| b9d1 | Predicted to enable hedgehog receptor activity. Predicted to be involved in cilium assembly and smoothened signaling pathway. Predicted to act upstream of or within cell projection organization. Predicted to be located in centrosome; ciliary basal body; and ciliary transition zone. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Joubert syndrome 27 and Meckel syndrome. Orthologous to human B9D1 (B9 domain containing 1). |
| id | name | namespace |
|---|---|---|
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| K16744 | B9D1; B9 domain-containing protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000046_04274035_04275654.mRNA | True | 828 | mRNA | 0.42 | 6 | 4273852 | 4275762 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000046_04098044_04120141 | LLGL1 | coding | upstream | 153500 | 4096231 ~ 4120352 (+) |
| CI01000046_04081845_04083512 | NA | coding | upstream | 190317 | 4081721 ~ 4083535 (+) |
| CI01000046_04040958_04080846 | NA | coding | upstream | 192533 | 4040023 ~ 4081319 (+) |
| CI01000046_04024795_04028000 | DRG2 | coding | upstream | 245852 | 4024551 ~ 4028000 (+) |
| CI01000046_03998572_04009276 | ZNF598 | coding | upstream | 263636 | 3998572 ~ 4010216 (+) |
| CI01000046_04308380_04317709 | GRAP, GRAPA | coding | downstream | 32618 | 4308380 ~ 4317970 (+) |
| CI01000046_04319601_04326459 | NA | coding | downstream | 43839 | 4319601 ~ 4326532 (+) |
| CI01000046_04478947_04510165 | ARHGAP23A | coding | downstream | 203185 | 4478947 ~ 4511125 (+) |
| CI01000046_04532653_04542785 | PLCD3, PLCD3A | coding | downstream | 256891 | 4532653 ~ 4542785 (+) |
| CI01000046_04545960_04557955 | NMT1A, NMT1 | coding | downstream | 270198 | 4545960 ~ 4558453 (+) |
| G197103 | NA | non-coding | upstream | 5980 | 4267478 ~ 4267872 (+) |
| G197099 | NA | non-coding | upstream | 18390 | 4255254 ~ 4255462 (+) |
| G197095 | NA | non-coding | upstream | 28963 | 4244450 ~ 4244889 (+) |
| G197069 | NA | non-coding | upstream | 35047 | 4238517 ~ 4238805 (+) |
| G197068 | NA | non-coding | upstream | 37180 | 4185707 ~ 4236672 (+) |
| G196861 | NA | non-coding | downstream | 1668 | 4277430 ~ 4280227 (+) |
| G197106 | NA | non-coding | downstream | 15985 | 4291747 ~ 4292809 (+) |
| G197107 | NA | non-coding | downstream | 17860 | 4293622 ~ 4293821 (+) |
| G196879 | NA | non-coding | downstream | 21455 | 4297217 ~ 4297982 (+) |
| G196866 | NA | non-coding | downstream | 53115 | 4328877 ~ 4329902 (+) |
| G197055 | NA | other | upstream | 124072 | 4149423 ~ 4149780 (+) |
| CI01000046_03943890_03945302 | ATP5J2 | other | upstream | 328352 | 3943794 ~ 3945500 (+) |
| G196936 | NA | other | upstream | 1079581 | 3186995 ~ 3194271 (+) |
| CI01000046_02451052_02454565 | MAFK | other | upstream | 1816572 | 2442395 ~ 2457280 (+) |
| CI01000046_01865451_01881353 | NA | other | upstream | 2314704 | 1865451 ~ 1881369 (+) |
| G197121 | NA | other | downstream | 95249 | 4371011 ~ 4371430 (+) |
| G196869 | NA | other | downstream | 139768 | 4415530 ~ 4421687 (+) |
| G197352 | NA | other | downstream | 998620 | 5259318 ~ 5276453 (+) |
| G197528 | NA | other | downstream | 1450359 | 5726121 ~ 5742684 (+) |
| CI01000046_06808895_06820945 | GSPT1, ERF3B, GSPT1L | other | downstream | 2544176 | 6808507 ~ 6821543 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
