CI01000046_04319601_04326459


Basic Information

Item Value
gene id CI01000046_04319601_04326459
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4319601 ~ 4326532 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_04319601_04326459.mRNA
ATGGCACTGTCACAGGTTCAGTGCCTTGATGACAATCACGTCAACTTGCGTACTAACGAGTCCAAGCCGGAGTTCCTTTACAGCGAGGAGCAGAGAATCGCGCTGGAGACACTTATACACGATGGACAGAGCGCCTTTGAGGACTACATCAAAACAAACAACATCCGCTGCTTTCTATCGGACCTTGAACTTGAGAGGATTCTCCACACTGTGGAGGTGTATTGCCCGGGTTCCCCCGATAATAATGCTGAACTGTACGGGGAAAGTGATGGGGAAGAGCTTTCCCTGCAGTACTGGCCCGACCGCTCCGACTGCTCGATCCCACAGCTGGACATCGGGTGGCTGGACCGGGTGTCCTACCGCGGACTGACGCGTGTTCAAGTGTACACTCAACCCCCTTATGAGGGACAGTCACATATTAAAGAGGTCGTTAGAAAAATGATCGGCCAAGCACAGAAGGTTATTGCAATTGTCATGGACTTGTTCACAGATATTGACATATTCAAAGATCTTCTGGATGCAAGCTACAAGCGGAAGAACTTGAGAGTGCGCAGCATCAGAGGGGTACAATTTTTCAGTCGATCCTCAAAGAGAGTGTGTGGATACCAAAGCCAGAAGTTCATGTTTATTGACGGAGACAAAGCAGTCTCAGGGTCATATAGACTGGACAGAAACCTCATCACTGTTCTCACCGGCCAAGCAGTTGATACATTTGACACATTGTTTCAGGACATGTATTTGTTGTCTAATGGAGTGTGCCTGAGTAAGATTAATCTGAGCAGTGAGCCTGAACCTGAGTTCCTCCCTCAGGCGGCACCCACTGTTCTTCCCTCAGCAACCAGGGCACTCAAGCTCATTAACCCAAAATACGCTCTGGTCTCCAACTGCGCTTTCACTACCAATGGACCTGTATCTGACCAGACAAGTGCCAAGAACAGCATTTCCAAGAATCAGACGGAAGTCATCAAACAAATCAAAGACACCCCAGTGGTGCCACCTGTTCACCCGGGACTTCTCAACCTGGAAAAGGCGAACATGATCAATTATGTGCCGACCTGGCCTGATCCTGACCCACCGAGTGATGTCATTGGTTTCATTAACATAAGAGACTCCAACAAGCCATTGCAAGCTCACCTAATGCGTTCAGAGCTCTTTGAAGTGTCTCAAGCCATCCGATTCAAGGATCCTTTTCATGAGCCAAAGGAGTCTTTATCTCTGAGGGCTTGTCCTGGACCTATATCCCAAACTCCCTCTAATCCTGAAGCTCTAACTCAGGAGCAAACATCAGGAGAAGCACAGAAGAATTTTGATCAAAATCAGCATCAAACAAGCAGCCAGAGTGAGAATCTTATCTTGCCTGTGGAAAAGCCAGAAACACTGCATGTGCTTGCCTGTAGTAAAGTTGATAAAGAGGAACTATGTGTAATGGAAAAAGACACCTTTGACATCTCTACATCTTTGCAGAGTAAAAACATTCACACTGAAAAAGACTTTGCCAATGCAATTCCCAATGTGTCTGTTACTCAGGGCGATAGAGTCTCAGATACAAAGCAAACCCTGGATACTCCACAACCACTGAAATGTCCTACCCAAACCTCTGACAATCTTGACATGAAATTATCATCAGCGGTGTACAGCGAAACTCTTTGTGACTCATTTGCAATTCCAGACACACCTTTTGTAAAGCAAAGCCTCGATGACCAAGTCTTAATTGATGTTGCCACTCAAGAACACAAAGATACAAAACCAGAGACAAACCAAAATGGCTGGAATGGTACACAGATGTCTAACTGTGACTCCAGCATCTCTTCATTGTCTGATGTATACTATGATTGTTTTAGCCCTGTTGCTGACTTAAGGTTTGTAGAAGATTTTTTTGTGCCTGACAAAACACAAGAATCTTTGCATAATCCAATCAAAAATGGTCATCAAGAGCAGGAAGTTCCTTGTTCAAATTCATCCTCAGCTCAAGATCTGGATTTGGATAAGAAACAGACCTTGTTTACTCCAAAACTTTTGAAAACCTCTTGCAGTATTGTCTTCAATTTCTTATCTACAGAGTTCAAAACAAAGACTACACCTTCCGAAACCACCTTTGCCCAAGAAAGTGATCAAGGTATCATAATAAATGATAGTAAACTACCAGTCAAAGATTTCTCACAGACACCGAATGGTTGTTTCAACTTCTCTTCAACTTCCGAGGAATACTTTGAATGCAGTGACACAGTGGGTTTGAATTCGGATATTCATGGTATGGTTTTTGAGAAACCAAGCTCAGTTGAGAACTTCAACCTGAATAAACCTCTGCAAATACTGAAGCCCGTACTGGAAGCTGAGAAATTTTCTAAGCTAAGCTGTCAGAACATGAAAGAAAAGGATGAACCTAAAATGGATTCTGGACAGGAGCAGCCTGAATTTCAGCACATACTAGAAATAACAGCTGACAGTAACATAGTGGCAGATGAAATTAAGGCAGTTTTAGGGTCAGAAGATAATACTCAAACTCAGCTGGATGAGAAAGTTCACAGACACCAAGAACAAGTGTCTGAAGTTACATCAGAGCCAGTAGTAGAGAGCAAATCAATGAGTAACTTTTCACAGGAACATGAGATAAGTGCTTCTCAGGAAATTTTAGAAATACAGACCAAGTCTGTAGAGTTATTTGAGAAAGTTAAAAAAAAAGAGCCAATGCAAGGCTTACAACTTGATGTAAATCTAGATTTAGCGTGTAAGGAACCTGAAATAGAACCACTACAGGACTTACAATCTGACATACATCTGGATTTAAAATGTGAGAGAAAAACAGTACAGTTACCTGAGAAATATTCAAAACCGCAACTTCAGGATTTAGAATCTAAGGTAAGTCAAGATGTAAAATGTGTGGGACAGTCTGTAAAGTTAGCTGAGAAAACTGCACAACTGCCACTGCAGGACTTACAACCTGAGGTAACTGTAGATTTAATATGTGAGGGATTATCTGTACAATTACCTGAGACAACTACTAAACCGCCAATACAGGACCCACAGTCAGAGGAAAGTCCAGATTTAAAACTCAAACCTTCAGAAGTGAATGCTATCAACAAACTGTGTTTGGCAACAGGCAGTGAATCTAGGAACTCAATACTGCAAGATAAAGCAGATATAACTTCTGTATTTCCAGAGGAGACCGAGGTAACAAATTCTGTAGAGTTGCCTAAGACTGAGCAACTGCAAAATCCATTGACTTATTTAGATCCTGGATCAAATCATCCACCCAACCTAAAATCTGAAGAGCATGTGAACGAGCACTTACGGCTGCAGAATGATGAGGTGAGTCAGGCAGTGTTAAAGATAGACTCTGAGGAGCATAATCCTCAAGAGAAACTGCCTGAACAGTTTGAAACCATTGAGCTATTGATATTAGAGGATTCAGACACCCAAGAGCTGAATCATTCTGATCCCATAAGACCAAGAGCTGCAATGAGAAAAAAAACAAAGGCAAGCAAAACTGAGCCTATAGAACAGAAAACTACAAATGATAGAAAATGTAAAGAGAATCAGCTGGGTCATGATGTTAACAGTAGGAATAAGAAGGAAACATGCCACCCAACAGCTTTGATTGAGGAGAAACAAGAAGGGGAACATATTTGCACAAATCAGATGAACAAGAACCTGCCAGAGGCAAAATCGAAGCTGGAGTGTCTGGTTAGAAAGCAACCACATCAAACATCATCCAGAATTCCTATTCAAGCAAGAGGAGGGTTAACCAAGTTAACCATCAGCAAAGCAGACACTGGCAATCGCTTATTTGGGCTTCGAGCTCCTAAAGCTGGATTGCATAGCAAGCTGCCATCACTTGGAAAACCACTTGGGCAGAAGAAGCCTAGCCTTACATTATTTCCATCTCCTGAAAAATTGTCCACAGGAGCAATCGCTCCAGTTAGGTCAACACAAATTCATCAGAGACCGACAGTCCCCTCACCAAATGGTCCCATCTCTCCCCTAAAACAGGCTCAGGTCCAGCTGATTGCACCTAGGACCAGGCAGTCAGACCAGCCAAATGTTTCCAGGAAACGTTCTGCATCCATTACAAAATATAGCTGCTCTTCAGGAATTTTATGTCCAGGACAAGTAAAGAAGAAGCAAGTGTTTAAAGGGTCTCCACCAAGCAGCTAGAATAAGGCAACAAAGTGCAGTTTGATTTCTTTGTTGCATACGGATTTCATAAAAGTAATAATGTGAAATAGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_04319601_04326459.mRNA True 4228 mRNA 0.43 5 4319601 4326532

Neighbor

gene id symbol gene type direction distance location
CI01000046_04308380_04317709 GRAP, GRAPA coding upstream 1631 4308380 ~ 4317970 (+)
CI01000046_04274035_04275654 B9D1 coding upstream 43839 4273852 ~ 4275762 (+)
CI01000046_04098044_04120141 LLGL1 coding upstream 199249 4096231 ~ 4120352 (+)
CI01000046_04081845_04083512 NA coding upstream 236066 4081721 ~ 4083535 (+)
CI01000046_04040958_04080846 NA coding upstream 238282 4040023 ~ 4081319 (+)
CI01000046_04478947_04510165 ARHGAP23A coding downstream 152415 4478947 ~ 4511125 (+)
CI01000046_04532653_04542785 PLCD3, PLCD3A coding downstream 206121 4532653 ~ 4542785 (+)
CI01000046_04545960_04557955 NMT1A, NMT1 coding downstream 219428 4545960 ~ 4558453 (+)
CI01000046_04563154_04565515 NA coding downstream 236555 4563087 ~ 4565727 (+)
CI01000046_04579543_04581492 NA coding downstream 252749 4579281 ~ 4581540 (+)
G196879 NA non-coding upstream 21619 4297217 ~ 4297982 (+)
G197107 NA non-coding upstream 25780 4293622 ~ 4293821 (+)
G197106 NA non-coding upstream 26792 4291747 ~ 4292809 (+)
G196861 NA non-coding upstream 39374 4277430 ~ 4280227 (+)
G197103 NA non-coding upstream 51729 4267478 ~ 4267872 (+)
G196866 NA non-coding downstream 2345 4328877 ~ 4329902 (+)
G196892 NA non-coding downstream 8454 4334986 ~ 4335276 (+)
G196888 NA non-coding downstream 17066 4343598 ~ 4343875 (+)
G197109 NA non-coding downstream 24115 4350647 ~ 4350867 (+)
G196834 NA non-coding downstream 24954 4351486 ~ 4353234 (+)
G197055 NA other upstream 169821 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 374101 3943794 ~ 3945500 (+)
G196936 NA other upstream 1125330 3186995 ~ 3194271 (+)
CI01000046_02451052_02454565 MAFK other upstream 1862321 2442395 ~ 2457280 (+)
CI01000046_01865451_01881353 NA other upstream 2360453 1865451 ~ 1881369 (+)
G197121 NA other downstream 44479 4371011 ~ 4371430 (+)
G196869 NA other downstream 88998 4415530 ~ 4421687 (+)
G197352 NA other downstream 947850 5259318 ~ 5276453 (+)
G197528 NA other downstream 1399589 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 2493406 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026649 si:dkey-27o4.1 coding NC_007114.7 CM002887.2 39619571 ~ 39627412 (-)