CI01000046_04532653_04542785 (PLCD3, PLCD3A)


Basic Information

Item Value
gene id CI01000046_04532653_04542785
gene name PLCD3, PLCD3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4532653 ~ 4542785 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_04532653_04542785.mRNA
CTTAAAGCCATACCTGCAGGCTATCTGAGACATGCGGATCAGAACCAGGATGGGAAGATGAGCTACGACGAGGTGAAACATCTGCTACAGCTGATCAACATTGACCTGAACGAACAGTATGCTCGTACCCTCTTTAAGAAGTGTGATCGTTCCTGTGACGGCCGGCTGGATCACGTGGAGATTGAGGAGTTCTGTCGTGAGCTGATGCGCAGGCCGGAGCTGGACGCGGTGTTCAGGCATTATTCCGGTAACGGATGTGTGCTCACCACCTTGGAGCTGCGGGATTTTCTTGGAGACCAGGGCGAGGACGCATCACTGGCCCATGCGAAGAGTCTCATCCACACCTATGAGCTCAACAACTGGGCCCAGAAGAATCTGTTCATGACCCAGAACGGTTTCACCATGTACATGCTCTCGAAAGAGAACGATGTGTTTAACCCGGATCACGCTCACGTGTATCAGGACATGAGCAGACCACTGGCTCACTACTACATCTCTTCCTCTCATAATACATACCTGACTAAAGACCAAGTGACCAGTGCCAGCAGCACTGAGCCTTATATCAGAGCTCTGCATCAGGGCTGTCGATGTGTTGAGCTGGACTGCTGGGATGGTGATAAAGGAGAGCCCATGATCTTCCACGGACACACGCTCACCTCCAAAGTGCTCTTTAAAGAAGTCATCGAGACCATCGCTCAGTACGCCTTCAAGGCATCTCCATATCCTCTGATCTTGTCCCTGGAGAATCACTGCTCAGTGGAGCAGCAGGCGGTCATGGCGCAGCACCTTCGCTCCATTCTGGGCAAAAAGCTTCTGAAGAAGCCACTTAATGAGCTGCCCCTCAAACAGCTGCCCTCGCCTGAGGAGTTGATGGGGCGGATCCTTCTGAAGGGGAAGAAGTTGAATGGTCTGCTGGGGAAGACTGACAGCTGGATTAGCTTCTCAAATAGCTCAGATGAAGATCCTGCTGCGGGAGGGGGCGGGAACAAAAAGGAATCCAAAAAGGATCCTGTAAGGTCTGTGAGCACTAAACTGAGTCCAGAGCTGTCAGATATGGTGGTGTATTGTCAGAGTGCGCCCTTCAGTGGTTTCGAGACAGCCAATCAGAGACCTCCTACCGTAATGTCCTCTTTCTCTGAAAATGAGGCACTTAAACTCATCAAAGACTCGGGGAAAATGTTTGTTCGACACAACAGTCGGCAGCTGAGCAGGATTTACCCATCAGGCCAGAGATTACAATCCTCCAACTACGACCCTCAGGACATGTGGAACGCGGGCTGCCAGATGGTGGCTCTGAACTTCCAGACACCGGGAGAGCAGATGGATCTGAACCAGGGCCGCTTTCTGCCCAACGGGCGCTGTGGGTACGTGCTCAAACCTGACTTCCTGTGTCACCCGAAGTCCGACTTTGACCCTGAGAACACAGGTGGAGGACCAGGACACATACCCACACAACTTACCATACGGGTGATTTCTGCTCAGCAACTTCCTAAAATAAACACTGACAAGCCCAACTCCATTGTGGACCCGCAGGTCTGGGTGGAGATTCATGGAGTTTCCATCGATAAGGCTCGTGCCAAAACCCAGCGCATTGACAACAATGGTTTCAACCCCCGCTGGGATTGTACTGTGAGTTTTCAGCTGCAGGTGCCTGAACTGGCCTTGGTGCGTTTCATGGTGGAAGATCACGACCACAAAGCTAAGAACGATTTTATTGGCCAATTCACCCTCCCCTTCACCAGCCTGCGAACA

Function

symbol description
plcd3a Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within intracellular signal transduction and lipid catabolic process. Predicted to be located in cleavage furrow and cytoplasm. Is expressed in spinal cord. Orthologous to human PLCD3 (phospholipase C delta 3).
plcd3 Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within angiogenesis; labyrinthine layer blood vessel development; and regulation of cell population proliferation. Predicted to be located in plasma membrane.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_04532653_04542785.mRNA True 1752 mRNA 0.52 12 4532653 4542785

Neighbor

gene id symbol gene type direction distance location
CI01000046_04478947_04510165 ARHGAP23A coding upstream 21528 4478947 ~ 4511125 (+)
CI01000046_04319601_04326459 NA coding upstream 206121 4319601 ~ 4326532 (+)
CI01000046_04308380_04317709 GRAP, GRAPA coding upstream 214683 4308380 ~ 4317970 (+)
CI01000046_04274035_04275654 B9D1 coding upstream 256891 4273852 ~ 4275762 (+)
CI01000046_04098044_04120141 LLGL1 coding upstream 412301 4096231 ~ 4120352 (+)
CI01000046_04545960_04557955 NMT1A, NMT1 coding downstream 3175 4545960 ~ 4558453 (+)
CI01000046_04563154_04565515 NA coding downstream 20302 4563087 ~ 4565727 (+)
CI01000046_04579543_04581492 NA coding downstream 36496 4579281 ~ 4581540 (+)
CI01000046_04584213_04592141 NA coding downstream 40877 4583662 ~ 4592290 (+)
CI01000046_04594068_04600391 RETSAT coding downstream 50926 4593711 ~ 4600988 (+)
G196889 NA non-coding upstream 88771 4437237 ~ 4443882 (+)
G197140 NA non-coding upstream 96401 4435878 ~ 4436252 (+)
G197136 NA non-coding upstream 110694 4421736 ~ 4421959 (+)
G197135 NA non-coding upstream 119304 4412862 ~ 4413349 (+)
G197130 NA non-coding upstream 134823 4397518 ~ 4397830 (+)
G197153 NA non-coding downstream 98396 4641181 ~ 4643913 (+)
G197158 NA non-coding downstream 106165 4648950 ~ 4708769 (+)
G197156 NA non-coding downstream 115222 4658007 ~ 4684792 (+)
G197169 NA non-coding downstream 179404 4722189 ~ 4736190 (+)
G197170 NA non-coding downstream 193479 4736264 ~ 4744725 (+)
G196869 NA other upstream 110966 4415530 ~ 4421687 (+)
G197121 NA other upstream 161223 4371011 ~ 4371430 (+)
G197055 NA other upstream 382873 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 587153 3943794 ~ 3945500 (+)
G196936 NA other upstream 1338382 3186995 ~ 3194271 (+)
G197352 NA other downstream 731597 5259318 ~ 5276453 (+)
G197528 NA other downstream 1183336 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 2277153 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026644 plcd3a coding NC_007114.7 CM002887.2 39260082 ~ 39305291 (-)