CI01000046_04563154_04565515


Basic Information

Item Value
gene id CI01000046_04563154_04565515
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4563087 ~ 4565727 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_04563154_04565515.mRNA
CTATAAATAAAAACTAATCCTAAATTGTTTTGTATATGCCAAACACCTAATAACCTCCTAACAGGAAATGACAACAGGAAATGATGAAAGGAAAGTGTGGCAGCTGAATCTCTCAAATACCAAGTCCATTCAGAGCAGTTCTCATTTGAAAATCAGCAGTGGCAACAAAATGCCTGAAAATATTTACATAAATACTCTCCAACATCACAATTCAAGATCAACAGAGAAAGATCAGCAGAAGGAGAGTGTCAGTGATAAGAGAGATGGTGTCTGTATGGTGGTTCTTCTCTCTGTTCTCCTCTTCCTGTCTCTGCTGGTGAATGCAGTGTTGGCTTACCTCTGTGAGTTGGCTTACCTCATGTTTTACACATCAGTTTTACATATCAGTTGTGTTTGCAATTGTGTTTGCACTGTGTATCAGTTTCTCAATACTATTTTATGCTTCACAGATTACACCAGTGACACAAATCAGTTAATGGGATGTGAGCCAGTGACAAATAACTCAAACCTAGGTTTGCCTGACAGGTGGGTCCAGGACAAGGGCAGATTCTATGTTTTCTCCAATAATACAAAAGACTGGAACAGCAGCAGAGAACGCTGTCAGGATCTGGGTGGAGACCTGGTCATCATCAACAGCATTGAGGAACAGGAATTTCTTGCTCAGCAAATAGTCACTTTTAATGCATTGGTGCTACACTGGATTGGTCTGACTGACCGCCAGACTGAGGGGACGTGGCTATGGGTGGACAACACCCCCTTAAACAACAACCTCTCATGGTGGATTTTCCCTCCTGACGATTATGATACAAATGATCCCTTGGGTGAAGACTGTGCTGTATTAAATGGACATATAAGAGGAGAAAAATGGGGAGATATTTCTTGTTTGAAAAAGGAAAGAAGCATTTGTGAAATTCCATGTTATTGATCAATGCTAAAGTATCGTTAATGACTTTCAATATCCCTGTTTATGTGTATTATAGTATATATGTATTACAGTGTAGAATCTGTGTAGCTCTTTATAAATAATACATTTGTATTCTTTATTTTGTAATTATTGTTAACAGCATTGGCCAATTGTACATGTCATTGTCTTTAAAATATTAAGCACTTTATTTACAACAAGAATGAATGAATGAA

Function

NR:

description
Immune-related, lectin-like receptor 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_04563154_04565515.mRNA True 1137 mRNA 0.38 5 4563087 4565727

Neighbor

gene id symbol gene type direction distance location
CI01000046_04545960_04557955 NMT1A, NMT1 coding upstream 4634 4545960 ~ 4558453 (+)
CI01000046_04532653_04542785 PLCD3, PLCD3A coding upstream 20302 4532653 ~ 4542785 (+)
CI01000046_04478947_04510165 ARHGAP23A coding upstream 51962 4478947 ~ 4511125 (+)
CI01000046_04319601_04326459 NA coding upstream 236555 4319601 ~ 4326532 (+)
CI01000046_04308380_04317709 GRAP, GRAPA coding upstream 245117 4308380 ~ 4317970 (+)
CI01000046_04579543_04581492 NA coding downstream 13554 4579281 ~ 4581540 (+)
CI01000046_04584213_04592141 NA coding downstream 17935 4583662 ~ 4592290 (+)
CI01000046_04594068_04600391 RETSAT coding downstream 27984 4593711 ~ 4600988 (+)
CI01000046_04602081_04604842 CDK21 coding downstream 36354 4602081 ~ 4605621 (+)
CI01000046_04615766_04638586 NA coding downstream 50039 4615766 ~ 4638942 (+)
G196889 NA non-coding upstream 119205 4437237 ~ 4443882 (+)
G197140 NA non-coding upstream 126835 4435878 ~ 4436252 (+)
G197136 NA non-coding upstream 141128 4421736 ~ 4421959 (+)
G197135 NA non-coding upstream 149738 4412862 ~ 4413349 (+)
G197130 NA non-coding upstream 165257 4397518 ~ 4397830 (+)
G197153 NA non-coding downstream 75454 4641181 ~ 4643913 (+)
G197158 NA non-coding downstream 83223 4648950 ~ 4708769 (+)
G197156 NA non-coding downstream 92280 4658007 ~ 4684792 (+)
G197169 NA non-coding downstream 156462 4722189 ~ 4736190 (+)
G197170 NA non-coding downstream 170537 4736264 ~ 4744725 (+)
G196869 NA other upstream 141400 4415530 ~ 4421687 (+)
G197121 NA other upstream 191657 4371011 ~ 4371430 (+)
G197055 NA other upstream 413307 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 617587 3943794 ~ 3945500 (+)
G196936 NA other upstream 1368816 3186995 ~ 3194271 (+)
G197352 NA other downstream 708655 5259318 ~ 5276453 (+)
G197528 NA other downstream 1160394 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 2254211 6808507 ~ 6821543 (+)

Expression


Co-expression Network