XLOC_009372 (trmt9b)


Basic Information

Item Value
gene id XLOC_009372
gene name trmt9b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 33702918 ~ 33734112 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018419
ACTGAGCCGGCCggttacacacacagacacaattaGTGAGTGGTGTCGATGTTTTATCGCTGACTTTCTCCTACATGGTAATACAATGTCGCGAAATGAAGAAAGAAGGACGTGTCGTGTTTGATGTCTGCGCGACTGCAGCCTTGAAAAGAGGAAAGTGCTGAAGATGCTCTGTGGGCTTTAATAGAGAGCAGCATGGACGAGGCTGCCAGCCAGCTGGAGAGAGAGCATGTTCACAGCGTGTACGAGAGGATCGCACCCTACTTCAACGACAGCCGCTACAAAGCTTGGCCCAAGGTCAAACAGTTCCTGCTTGAGCAAGAGCCCGGCAGCATCGTGGCTGACATCGGATGTGGCAATGGCAAATATCTGCACATTAATGAGGAGATCTTCAAGCTGGGCTGTGACGTGTGCCGTCCGCTGGTGGAGTCTGCGTGGAATAAAGGGCACGAGGTACAGATTTGTGATGGCCTGCGTCTGCCCTACAGAGACGCCTGTTTTGATGCAGTGCTCTCCATTGCAGATGTGTTACAGAATGAACAAATTCACCTTCATCAGTGAGTCGAAGCTTTCCTAGTTCATCATCCCAGTGCGGATCCACACCAGAATCATACAACACCAGATCCGGCCTGAAAGACTCCAGTAGCCAAGGAAGATGTTCCTGGACTTGCATAATACAACAGATAGGTGTATATTTTATCAAGAGTTTTTCTTAAAGGGGCAGTAGGTGATT
>TCONS_00018420
TGTGCACACTGAGCCGGCCggttacacacacagacacaattaGTGAGTGGTGTCGATGTTTTATCGCTGACTTTCTCCTACATGGTAATACAATGTCGCGAAATGAAGAAAGAAGGACGTGTCGTGTTTGATGTCTGCGCGACTGCAGCCTTGAAAAGAGGAAAGTGCTGAAGATGCTCTGTGGGCTTTAATAGAGAGCAGCATGGACGAGGCTGCCAGCCAGCTGGAGAGAGAGCATGTTCACAGCGTGTACGAGAGGATCGCACCCTACTTCAACGACAGCCGCTACAAAGCTTGGCCCAAGGTCAAACAGTTCCTGCTTGAGCAAGAGCCCGGCAGCATCGTGGCTGACATCGGATGTGGCAATGGCAAATATCTGCACATTAATGAGGAGATCTTCAAGCTGGGCTGTGACGTGTGCCGTCCGCTGGTGGAGTCTGCGTGGAATAAAGGGCACGAGGTACAGATTTGTGATGGCCTGCGTCTGCCCTACAGAGACGCCTGTTTTGATGCAGTGCTCTCCATTGCAGTCATCCACCACATGTCCACCAAAGAGCGGCGTATCCGAGCAATAAAAGAGATGGCGAGAACTCTGCGCGTCGGAGGACGGATCATGATCTACGTTTGGGCCATGGAGCAGAAGAGGCGCAAGTTTGAGAAGCAGGACATCTTTGTTCCCTGGAACCCCAATCCTCCTTTATCTCCTGCCCTCAGAGGAACCAGACAGCGAGGCGACGGGACCCAAAGCGTGAGCGATGAAACTGCATCCGGCGACAAGTACAGGAAAGTGAGAAGCACATCCTCCATGTTGGACGAAGGTGACTTGATCAGTCCCAGTCAACAGAAACAGCAGAGGCTTTGGTTCTTCTCCAGATCTTTGGATTCTGTGCTGGATTTCGGCAGCTTGACTCTCTCCCGTTCCTCCTCCAGCACTTTACAAACTGAAACAGTGGAAAACCGAAACCGACGAGGCAGTGGTCGAGGTCTTATAAGGCAGATGTCCAGTCTTTTTTCATCCTCTTCCAGAACTAGTCTAGAAGAAGATGTCTTCATCTCGGATTCCAATGAAACGGTGCGTAAAATAGACAATAGAAGTGCTGGCAATGGAAATGTGGAGCTTGTTCATGAATGTTCCTCTGTTCCACTGCCTGATTTGGTCTCCTACCTAAAGGACCAGTCGAATCTTGAAGGACAAGAGGAGGAATCGAGTCTGCGAGAGCCTTTGCGGAGGAAGGAAAGTTCTTCGTCTCTTCTGGAAGTCGAAGGGATGAAAGGAGAGCAGCCGAAAGACTCTTGTTTGCGGTACTATCATGTATTCAGGGAAGGAGAACTGACACAGTTGATCCAAAACCATGTGGATGATCTCCATGTTCTGCACACTTTCTTGGACCATGCTAACTGGTGCGTGGTGGCTGAGAAGATCCAGGTTTGGAAGGtttaaattgaattttaatgGTTTTAGGTTCTGTTTTAGTTTGAGATTTTTAAGTATTGTGACGTTGGGAGTGCTAATATTAAACGTTAACAGTATAAATGGCAATAAGCAGCGAGGTATTGATGCTCTGATGACCAACCTTGGTCCTAAATGTAACGTTTAGGCTAGTCTTAATATGAAAACggataaactaaatttaatattCATCTCGCTGTggcattttaaagggatagtataTGCCAAAATGGAAAAATTTACTGTAAGTTTacctcaccctcaggccatccaagatttATTGTTTGGTAGAACATTTGCTGAAACTAAATACAAGCTAAATTCAAGTCTATTCGGACTTTTAGAGTCCAAAATATGTGTACAGGTAGCACAAAATTATTACCTATGGCTTCTGACGTAACTATGATGTCTTATAAAGTTGAAGGATCATTGTGTGAAagaagttaaacattatttacatcAGTCAGGAGCCACgtgctttcattttgttttgtctaTACAagttttttgactctcaaagtgttgTACTTGAGTAAAAAATCATCTTGGATATCCTGGGGGTGAGTAAAATAACAtagaaattttcattttagggtgaactacaGCTTTAATTTTCGATGTTGTTTGGTTTTAGTTAAAAATAATCGACTTGCACTGATTTTAATGGTATATCACTGTTAGCTGTCTTCAGCAACGCCTGCCTGAAACAGAAAGCATAGCACATTGTTTTTTTGAACCAAACAATGTAAGCACATAACTAGAGTTTTCTTATTGAATGCTCTTCGCGTGTTTGTCTGTGTAGGTGTTGTGTTGTGCGGTTAATATTTTACCATATAGCTGTCGTGTTGTGGTGGTCTGAAGATTTTAAACAAGGTTTTAAATAGTCGACTGCTTGTTTATCAATTGCACATAAATTCCCGTCTTGAAAACTTGAACAATGAAACATGTTTGTGCCTGTGTTGTTGtgaattgtgtttgtttgtgtgtgtgtttgtattggtGTACCTTGACCATGTCAATGTCACAACAAAATCTTTAATTTTCCCTTAAACTTGAAccatttttatgtgtatttttgacttcaaaataataaaaagtactatattttgttttta
>TCONS_00018421
CACTGAGCCGGCCggttacacacacagacacaattaGTGAGTGGTGTCGATGTTTTATCGCTGACTTTCTCCTACATGGTAATACAATGTCGCGAAATGAAGAAAGAAGGACGTGTCGTGTTTGATGTCTGCGCGACTGCAGCCTTGAAAAGAGGAAAGGATGTGGCAATGGCAAATATCTGCACATTAATGAGGAGATCTTCAAGCTGGGCTGTGACGTGTGCCGTCCGCTGGTGGAGTCTGCGTGGAATAAAGGGCACGAGTCATCCACCACATGTCCACCAAAGAGCGGCGTATCCGAGCAATAAAAGAGATGGCGAGAACTCTGCGCGTCGGAGGACGGATCATGATCTACGTTTGGGCCATGGA

Function

symbol description
trmt9b Predicted to enable tRNA binding activity. Predicted to be involved in tRNA wobble uridine modification. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human TRMT9B (tRNA methyltransferase 9B (putative)).

GO:

id name namespace
GO:0002098 tRNA wobble uridine modification biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0000049 tRNA binding molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016300 tRNA (uracil) methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4851 Predicted to enable tRNA binding activity. Predicted to be involved in tRNA wobble uridine modification. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human TRMT9B (tRNA methyltransferase 9B (putative)).

Ensembl:

ensembl_id ENSDARG00000102636

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018419 False 733 mRNA 0.49 4 33702918 33734105
TCONS_00018420 False 2565 mRNA 0.43 4 33704751 33734112
TCONS_00018421 True 369 processed_transcript 0.51 3 33706680 33734106

Neighbor

gene id symbol gene type direction distance location
XLOC_009371 NA coding downstream 21240 33665924 ~ 33681678 (-)
XLOC_009370 CT027778.1 coding downstream 39746 33663055 ~ 33663172 (-)
XLOC_009369 stard13b coding downstream 62028 33467298 ~ 33640890 (-)
XLOC_009368 nbeab coding downstream 377872 32895659 ~ 33325046 (-)
XLOC_009367 NA coding downstream 884923 32813736 ~ 32817995 (-)
XLOC_009373 pds5b coding upstream 10437 33744549 ~ 33807758 (-)
XLOC_009374 n4bp2l2 coding upstream 75752 33809864 ~ 33818872 (-)
XLOC_009375 mmp13b coding upstream 91638 33825750 ~ 33834577 (-)
XLOC_009376 CR855379.2 coding upstream 134549 33868661 ~ 33887667 (-)
XLOC_009377 NA coding upstream 135467 33869579 ~ 33877331 (-)
XLOC_009366 CR855389.2 non-coding downstream 1067141 32633290 ~ 32635777 (-)
XLOC_009364 NA non-coding downstream 1269245 32413314 ~ 32433673 (-)
XLOC_009383 FP017158.1 non-coding upstream 545309 34279421 ~ 34279535 (-)
XLOC_009389 NA non-coding upstream 868410 34602522 ~ 34607406 (-)
XLOC_009404 CR848683.2 non-coding upstream 1680354 35414466 ~ 35661368 (-)

Expression


Co-expression Network