CI01000046_04811748_04819011 (ZNF281A)


Basic Information

Item Value
gene id CI01000046_04811748_04819011
gene name ZNF281A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4811610 ~ 4819368 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_04811748_04819011.mRNA
GTATATGAAGAAATCATTATTTTGTCTCTCTTGATGTCTTTAGGATGAGTGAGGTGGCCTTGCATTGAAGCAGACCCCATCACCCCCGTTCCAGCATCAGTGTCGGTGTGATAACACTCAGAGCCTTGCCCCTTCAACATGAGCCTGATCCAGGACAAACTTGGCAATGAGTTCCTCCGCTCCAATGGTGGCATGGAGCCAGGCTTCGGTCCAGGCATGCTCATGTTCAGCCACCTGCCCCCTGTTACTAGCTTCACCCGTCTGGCCAGTCAAACGGTTATGGCTGACCTACAGCCCCATGAGATGATCTTGAAGAAGGAGAGGGACTCGCCGGACTGTGGAGGAGGAGGGCTGAGTGCTGGAGGCATGGGTGGTGGAGGTGGCATAGGAGGGATGATGGGAAGTATGGGCGATTATGTTCATGCCATGGGCATTAAACAGGAGAAGGTTTCTGAACACGATTACAGACTTCCTCTCTACCCGGGGGGTGGAGCAGGAGCCGGAGTACGAAGTGGAGGAGAGTTGCTGGAGGTCTCGCTAGGCAACCATCAGAACCTGCTGGTACATGACCTCAGTCTGGGAAATCTGTCAGGACGGCTGGTAAAGGAATCCTCAGGGAGGAAAGGTCGAAGGTCAAACGGTGAGGGACAGGAGGGCAAGACACGGAGGAAACGAGGAGAGTCGAAGTCAATGATGCTGGATCCAGATGGAGGGAGCTTGTCTCCAAACTCCAAACCGCACATCTGTGAGCACTGCAATGCAGCGTTCCGGAGCTCCTATCATTTACGCAGACATGTGCTTATACACACAGGTGAGAGGCCTTTCCGCTGCACTCAATGTAACATGAGCTTCATTCAGAAATACCTCTTACAGAGACACGAGAAGATCCACAGTGGTAAGTTCCTCAAATATTTTTCCAGGACGGACCGGTTGCTGAAGCACAAGCGGACGTGTGGAGATGCCATAAAAAAGGGTGTGGATGGAGCAGAGCACGAGTTGGGTGCAGCAGGTGACGGAGAACACGGCAGCTACGGAATCTCTCAGGGAAATGCGGCCACACCTGGCCGCAAACGGGGCAAGTCAAAAAACGCTGGTGAAGGGAGTGAACGCAAGCGTAAGAAGTCATCCGGGTCTTTGGGGGTGACACATAGTCAGGGGGCGGATGGTTACGGGGTGCATGACATGAACCACGGGGTCTCATCAACGTCATCTTCAGTCCAGCCGGGCCCCAGCATGCATGGCGAACACGGCCGGGCTCCCAAGATGGCCTTCAAGAAGGGGAACAGGAAGTCCCTGGAGAAGACTACTCACCCCATGGATCAAACCAAGCCAGGAGGCATGGAGTTGCCTGCGGGAGGAGGCTTGGAAGGCCTTGGACTTCTTCCAGGTCCAGGGGCCAAAGTTGGTCCCAGCAGCAGTAACTACGACGATGCCATGCAGTTTTTGAAGAAGAGGCGGTACCTCAATGTGACAAACAATGGCGGTGCGGGTTCTGGAGCTTCAGACTACGACATAGGCGTCAGTCATCTGCAGTCGCAACCGACGGTCATTCAGGGTGTCGTTTCTGGGGTTCTAGACGGTGATGCCGCGCTAGGCCTGCTGGACTCATCCCCTCTGGGAGATATAAAGCAGGACAAGTCTGGAATCCCAGATGAGGTTCTCCAGAGCTTGTTGGACCACTACGCTCCCAAGCCTGACGTGACTTTTGACATCACCGATCCCCATCATGTGGAGCTCCAGCCAGCTGGCACGGATGCTGCAGACCCACTGGGACCTGAGGGCTCCCCGTCAAGTCCCAACAGTGGCGACAAAGCCGTAATCATGCACGAGTACTCGCGTTTTCTTCTACAGGCACTAGAGCGGACCAGTCACAACGCAAGCTTCCCATTGGGTCCTGGTTCTGCCGTGACTACCACGGGACCATTTCCCGGGCATAGCCCGCTTTTGTCAGACAAGCATGTGTATACTTCCTCACCCCTTGAGTACTCGTTCTCACAAGCAGTCTCGTCGTCGCCCTCCCTTTCGTCTGTGCCAAAGTCTCACTTTGGTCTCCTAGAGGGCTCGTCGCCTCCAACGGGCTTCCACATGAGCAGCCTGGAGCAGTCTGCGCACACACAGCAGCTCACACCTTCCCAGGAGCTCACCGAACAGCTGGACAAGCAACACACCTCCCCTCCGCCACCTCCACATACCCCCAACACCAACGCCTACCAGATCGCACCTCAGCCTCCCGACTTGGGTGGTCCAAAAGAACCGCAAGGGCCAAAAAATGGAGCTGCAGCCACCACTGGAGGATTCTCCCTGGCTTCTTCCCAGGACCTGGCCACCCTGGACCCAGCCAAGGCTTCTTATCAGATTGAAAACTTTGCCCAGGCTTTTGGGGCACAGTTTAAAGGGGGGCGAGTGTCCCTGGCCTTCAGCAGTGACTCGGGGGGAGAGGTAAATCACCGCTTACAGACATCAGTCTCCGAATTCTCAGGGTATAGCAGTCTCTTGGCTGATGCCAGCGACCCAGTCAGCAGTGGCTCCAAAACCCCAACAAGCCAAAGCTACAGGTGAATGGGCTCCTGTGCCTATATGCTCAGATGGAGGTTCCCTATTTTTATTTTGTCATGCTGTCTTTATTTTGTATTATTATTATTGTTGTTGGTATTATTATTGTTATTAATAATATTGTTATTATTATTATTTAGTTCTCCTACTTTAATGAAATTGTAATGTTTTTAAGTAATGTTTTTCTCACTGCCATTATGTTCATATGAAATTTCACTCTCCTTTGGCCTGCGATGCATTTTCCACTATTACGTTTTTTTTTTTTTTTTTTTTTTCCCAGTTTCCTTTGGAAAACAAGAAAAAACATCTGTTTTATTCTCAGTAGACTTTTAGTTCTGCTCTGTTAATCAAAAGATGGGGGAA

Function

symbol description
znf281a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human ZNF281 (zinc finger protein 281).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_04811748_04819011.mRNA True 2916 mRNA 0.52 5 4811610 4819368

Neighbor

gene id symbol gene type direction distance location
CI01000046_04806234_04808207 NA coding upstream 3275 4805355 ~ 4808335 (+)
CI01000046_04694468_04701075 NA coding upstream 110357 4693655 ~ 4701253 (+)
CI01000046_04615766_04638586 NA coding upstream 172668 4615766 ~ 4638942 (+)
CI01000046_04602081_04604842 CDK21 coding upstream 205989 4602081 ~ 4605621 (+)
CI01000046_04594068_04600391 RETSAT coding upstream 210622 4593711 ~ 4600988 (+)
CI01000046_04841558_04852685 NA coding downstream 22190 4841558 ~ 4853176 (+)
CI01000046_04861221_04879259 MPP3A, MPP3 coding downstream 41853 4861221 ~ 4880669 (+)
CI01000046_05279865_05281709 BAXA, BAX coding downstream 460497 5279865 ~ 5282127 (+)
CI01000046_05305482_05310465 NA coding downstream 485825 5305193 ~ 5310479 (+)
CI01000046_05315583_05316990 NA coding downstream 495817 5315185 ~ 5317089 (+)
G197173 NA non-coding upstream 52613 4758521 ~ 4758997 (+)
G197172 NA non-coding upstream 65504 4744862 ~ 4746106 (+)
G197170 NA non-coding upstream 66885 4736264 ~ 4744725 (+)
G197169 NA non-coding upstream 75420 4722189 ~ 4736190 (+)
G197156 NA non-coding upstream 126818 4658007 ~ 4684792 (+)
G197231 NA non-coding downstream 8436 4827804 ~ 4828132 (+)
G197240 NA non-coding downstream 68910 4888278 ~ 4888519 (+)
G197263 NA non-coding downstream 126584 4945952 ~ 4977657 (+)
G197303 NA non-coding downstream 204370 5023738 ~ 5024051 (+)
G197304 NA non-coding downstream 205129 5024497 ~ 5024757 (+)
G196869 NA other upstream 389923 4415530 ~ 4421687 (+)
G197121 NA other upstream 440180 4371011 ~ 4371430 (+)
G197055 NA other upstream 661830 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 866110 3943794 ~ 3945500 (+)
G196936 NA other upstream 1617339 3186995 ~ 3194271 (+)
G197352 NA other downstream 455014 5259318 ~ 5276453 (+)
G197528 NA other downstream 906753 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 2000570 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1104162 NA unknown NC_048576.1 CM023230.2 68528281 ~ 68531861 (+)